#1 Le 14/10/2013, à 15:29
- certes
reaction en fonction de ce que grep trouve
Bonjour,
Sorry s'il s'agit d'une question trop triviale ... je me perd dans les reponses que je trouve sur internet
je voudrais ecrire un script qui fasse un grep sur deux mots dans un fichier source et qui en fonction du mots identifie fasse une action spécifique ...
en clair
grep word1 ou word 2 sur source.txt
si word1 alors action 1 (+ecrit resultat dans output.txt)
si word2 alors action 2 (+ecrit resultat dans le meme fichier output.txt)
merci d'avance
Hors ligne
#2 Le 14/10/2013, à 15:38
- pingouinux
Re : reaction en fonction de ce que grep trouve
Bonjour,
grep -qw word1 fichier_source && action1 >>output.txt
grep -qw word2 fichier_source && action2 >>output.txtSi on trouve word1 et word2, on fera action1 et action2.
Hors ligne
#3 Le 14/10/2013, à 16:08
- ljere
Re : reaction en fonction de ce que grep trouve
tu as déjà fais le 3/4 de ton script
#!/bin/bash
word1=`cat source.txt | grep word1`
word2=`cat source.txt | grep word2`
if [ "$word1" == "word1" ]
then
echo "le mot 1 est bien la" >> output.txt
fi
if [ "$word2" == "word2" ]
then
echo "le mot 2 est bien la" >> output.txt
fiil y a sûrement plus court, mais dans l'ensemble ça fonctionne
edit: grillé par pingouinux
Dernière modification par ljere (Le 14/10/2013, à 16:12)
ancien PC Toshiba satellite_c670d-11 / Linux Mint 21 Vanessa
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Hors ligne
#4 Le 14/10/2013, à 16:13
- pingouinux
Re : reaction en fonction de ce que grep trouve
@ljere :
Le grep retourne la ligne complète, et ton premier test ne sera vérifié que si word1 est le seul mot de la ligne, et en exemplaire unique dans le fichier source.txt.
Hors ligne
#5 Le 14/10/2013, à 16:18
- ljere
Re : reaction en fonction de ce que grep trouve
ok
ancien PC Toshiba satellite_c670d-11 / Linux Mint 21 Vanessa
Nouveau PC ASUS TUF GAMING A17 GPU RTX 4070 CPU AMD Ryzen 9 7940HS w/ Radeon 780M Graphics / Linux Mint 21.2 Victoria / Kernel: 6.4.8-1-liquorix / Desktop: Cinnamon
Hors ligne
#6 Le 14/10/2013, à 16:38
- certes
Re : reaction en fonction de ce que grep trouve
Merci pour ces réponses si rapide !
je pense que ce serait mieux que je précise avec un exemple
Pour l'instant le script rapatrie un fichier html
exemple de contenu :
<span class="genusspecies"><a name="aminovorans" id="aminovorans"></a>Methylobacterium</span> <span class="genusspecies">aminovorans</span> Urakami <i>et al.</i> 1993, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20aminovorans&restrict=1">StrainInfo.net</a>) strain TH-15 = ATCC 51358 = CIP 105328 = IFO (now NBRC) 15686 = JCM 8240 = VKM B-2145.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB175629&cmd=Search&db=nuccore">AB175629</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. n. <i>aminum</i>, amine; L. part. adj. <i>vorans</i>, devouring, eating; N.L. part. adj. <i>aminovorans</i>, amine devouring.
<br>
<span class="taxon-subhead">Reference:</span> URAKAMI (T.), ARAKI (H.), SUZUKI (K.I.) and KOMAGATA (K.): Further studies of the genus <i>Methylobacterium</i> and description of <i>Methylobacterium</i> <i>aminovorans</i> sp. nov. <i>Int. J. Syst. Bacteriol.</i>, 1993, <b>43</b>, 504-513.
<br>
<a href="http://ijs.sgmjournals.org/cgi/reprint/43/3/504">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="aquaticum" id="aquaticum"></a>Methylobacterium</span> <span class="genusspecies">aquaticum</span> Gallego <i>et al.</i> 2005, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20aquaticum&restrict=1">StrainInfo.net</a>) strain GR16 = CCM 7218 = CECT 5998 = CIP 108333 = DSM 16371.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AJ635303&cmd=Search&db=nuccore">AJ635303</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. neut. adj. <i>aquaticum</i>, living, growing, or found in the water, aquatic.
<br>
<span class="taxon-subhead">Reference:</span> GALLEGO (V.), GARCIA (M.T.) and VENTOSA (A.): <i>Methylobacterium</i> <i>hispanicum</i> sp. nov. and <i>Methylobacterium</i> <i>aquaticum</i> sp. nov., isolated from drinking water. <i>Int. J. Syst. Evol. Microbiol.</i>, 2005, <b>55</b>, 281-287.
<br>
<a href="http://ijs.sgmjournals.org/cgi/content/abstract/55/1/281">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="brachiatum" id="brachiatum"></a>Methylobacterium</span> <span class="genusspecies">brachiatum</span> Kato <i>et al.</i> 2008, sp. nov.
<span class="taxon-subhead">Reference:</span> KATO (Y.), ASAHARA (M.), GOTO (K.), KASAI (H.) and YOKOTA (A.): <i>Methylobacterium</i> <i>persicinum</i> sp. nov., <i>Methylobacterium</i> <i>komagatae</i> sp. nov., <i>Methylobacterium</i> <i>brachiatum</i> sp. nov., <i>Methylobacterium</i> <i>tardum</i> sp. nov. and <i>Methylobacterium</i> <i>gregans</i> sp. nov., isolated from freshwater. <i>Int. J. Syst. Evol. Microbiol.</i>, 2008, <b>58</b>, 1134-1141.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.65583-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p> <span class='genusspecies'><a name=brachythecii id='brachythecii'></a>Methylobacterium</span> <span class='genusspecies'>brachythecii</span> Tani and Sahin 2013, sp. nov.
<br> <span class='taxon-subhead'>Type strain:</span> (see also <a href='http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20brachythecii&restrict=1'>StrainInfo.net</a>) 99b=DSM 24105=NBRC 107710.
et dans ce fichier je suis intéressé de récupérer ce qu'il y après l'expression
"genusspecies"><a name= (que je nommerai expression1)
par exemple "aminovorans"
pour faire ça j'ai écrit cette partie de code:
grep "\"genusspecies\"><a name=" ./methylobacterium.html | cut -c48-63 > strain-01.txt
awk -F\" '{print $2}' strain-01.txt > strain-02.txtprobablement horrible pour un informaticien mais ça marche
Le problème c'est qu'il y a des petites variantes du style
'genusspecies'><a name= (expression 2)
et donc ma question serait il possible de faire un script qui lorsqu'il trouve expression1 il cut entre 48 et 63
et expression 2 cut entre 62 et 77
et inscrive les résultats dans un fichier output.txt en conservant l'ordre d'apparition dans le fichier html ...
si vous me suivez 
super merci
Hors ligne
#7 Le 14/10/2013, à 16:59
- pingouinux
Re : reaction en fonction de ce que grep trouve
Avec ton exemple, est-ce ceci que tu veux récupérer ? Si c'est bon, tu peux rediriger le résultat de la commande sur output.txt.
$ sed -rn 's/.*<span class="genusspecies"><a name="([^"]+)".*/\1/p' methylobacterium.html
aminovorans
aquaticum
brachiatumMais ça peut ne pas marcher si tes lignes sont structurées différemment.
Hors ligne
#8 Le 14/10/2013, à 17:13
- ljere
Re : reaction en fonction de ce que grep trouve
python serait peut être plus pratique pour ce genre de travail
ancien PC Toshiba satellite_c670d-11 / Linux Mint 21 Vanessa
Nouveau PC ASUS TUF GAMING A17 GPU RTX 4070 CPU AMD Ryzen 9 7940HS w/ Radeon 780M Graphics / Linux Mint 21.2 Victoria / Kernel: 6.4.8-1-liquorix / Desktop: Cinnamon
Hors ligne
#9 Le 14/10/2013, à 17:28
- certes
Re : reaction en fonction de ce que grep trouve
pingouinux a écrit :
Avec ton exemple, est-ce ceci que tu veux récupérer ? Si c'est bon, tu peux rediriger le résultat de la commande sur output.txt.
$ sed -rn 's/.*<span class="genusspecies"><a name="([^"]+)".*/\1/p' methylobacterium.html aminovorans aquaticum brachiatumMais ça peut ne pas marcher si tes lignes sont structurées différemment.
on dirait que c'est le cas 
c'est déjà plus puissant que ce que je faisais
mais ça ne semble pas marcher pour récupérer correctement les expressions 1 et 2
au sujet de python, je n'en doute pas mais malheureusement je connais encore moins ...
Hors ligne
#10 Le 14/10/2013, à 17:45
- pingouinux
Re : reaction en fonction de ce que grep trouve
certes #9 a écrit :
mais ça ne semble pas marcher pour récupérer correctement les expressions 1 et 2
Dans ce cas, montre le résultat que tu souhaites, et le fichier .html si ce n'est pas le même.
Hors ligne
#11 Le 15/10/2013, à 12:03
- certes
Re : reaction en fonction de ce que grep trouve
Bonjour,
Désolé de ma réponse tardive
Voici le fichier source dans son intégralité:
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
"http://www.w3.org/TR/html4/loose.dtd">
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<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
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Methylobacterium
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<div id="main-text"><a name="r" id="r"></a>
<h3>Genus <span class="taxon-head">Methylobacterium</span></h3>
<p>
<span class="warning">Warning:</span> In the <i>List of Prokaryotic names with Standing in Nomenclature</i>, an arrow (<span class="arrow">→</span>) only indicates the sequence of valid publication of names and does not mean that the last name in the sequence must be used (see: <a href="../introduction.html">Introduction</a>).
</p>
<p>
<font color="#008000">Number of species cited in this file: 49
<br>
Number of subspecies cited in this file: 0</font>
</p>
<p>
<a href="../classificationmr.html#Methylobacterium">Classification</a> (Warning: see also the file "<a href="../classification.html">Classification of prokaryotes: Introduction</a>").
</p>
<p>
</p>
<p>
<span class="genusspecies">Methylobacterium</span> Patt <i>et al.</i> 1976, <i>genus</i>. (Type genus of the family <a href="methylobacteriaceae.html">¤</a> <i>Methylobacteriaceae</i> Garrity <i>et al.</i> 2006).
<br>
<span class="taxon-subhead">Type species:</span> <a href="#organophilum">¤</a> <i>Methylobacterium</i> <i>organophilum</i> Patt <i>et al.</i> 1976 (Approved Lists 1980).
<br>
<span class="taxon-subhead">Recommended three-letter abbreviation:</span> <i>Mtb</i>. (see the file <a href="../abbreviations.html">¤</a> "Three-letter code for abbreviations of generic names").
<br>
<span class="taxon-subhead">Etymology:</span> N.L. n. <i>methylum</i> (from French <i>méthyle</i>, back-formation from French <i>méthylène</i>, coined from Gr. n. <i>methu</i>, wine and Gr. n. <i>hulê</i>, wood), the methyl radical; N.L. pref. <i>methylo</i>-, pertaining to the methyl radical; L. neut. n. <i>bacterium</i>, rod or staff and, in biology, a bacterium (so called because the first ones observed were rod-shaped); N.L. neut. n. <i>Methylobacterium</i>, methyl bacterium.
<br>
<span class="taxon-subhead">References:</span> SKERMAN (V.B.D.), McGOWAN (V.) and SNEATH (P.H.A.) (editors): Approved Lists of Bacterial Names. <i>Int. J. Syst. Bacteriol.</i>, 1980, <b>30</b>, 225-420 (<a href="http://ijs.sgmjournals.org/cgi/reprint/30/1/225">Approved Lists of Bacterial Names in IJSEM Online</a> - <a href="http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=bacname">Approved Lists of Bacterial Names Amended edition</a>). [<a href="http://ijs.sgmjournals.org/cgi/reprint/26/2/226">PATT (T.E.), COLE (G.C.) and HANSON (R.S.): <i>Methylobacterium</i>, a new genus of facultatively methylotrophic bacteria. <i>International</i> <i>Journal</i> <i>of</i> <i>Systematic</i> <i>Bacteriology</i>, 1976, <b>26</b>, 226-229</a>.]
</p>
<p>
<span class="arrow">→</span> <i>Methylobacterium</i> Patt <i>et al.</i> 1976 (Approved Lists 1980) emend. Green and Bousfield 1983.
<br>
<span class="taxon-subhead">Type species:</span> <a href="#organophilum">¤</a> <i>Methylobacterium</i> <i>organophilum</i> Patt <i>et al.</i> 1976 (Approved Lists 1980).
<br>
<span class="taxon-subhead">Recommended three-letter abbreviation:</span> <i>Mtb</i>. (see the file <a href="../abbreviations.html">¤</a> "Three-letter code for abbreviations of generic names").
<br>
<span class="taxon-subhead">Etymology:</span> N.L. n. <i>methylum</i> (from French <i>méthyle</i>, back-formation from French <i>méthylène</i>, coined from Gr. n. <i>methu</i>, wine and Gr. n. <i>hulê</i>, wood), the methyl radical; N.L. pref. <i>methylo</i>-, pertaining to the methyl radical; L. neut. n. <i>bacterium</i>, rod or staff and, in biology, a bacterium (so called because the first ones observed were rod-shaped); N.L. neut. n. <i>Methylobacterium</i>, methyl bacterium.
<br>
<span class="taxon-subhead">Reference:</span> GREEN (P.N.) and BOUSFIELD (I.J.): Emendation of <i>Methylobacterium</i> Patt, Cole, and Hanson 1976; <i>Methylobacterium</i> <i>rhodinum</i> (Heumann 1962) comb. nov. corrig.; <i>Methylobacterium</i> <i>radiotolerans</i> (Ito and Iizuka 1971) comb. nov., corrig.; and <i>Methylobacterium</i> <i>mesophilicum</i> (Austin and Goodfellow 1979) comb. nov. <i>Int. J. Syst. Bacteriol.</i>, 1983, <b>33</b>, 875-877.
<br>
<a href="http://ijs.sgmjournals.org/cgi/reprint/33/4/875">Original article in IJSEM Online</a>
</p>
<p>
<span class="taxon-subhead">Note:</span> According to Bousfield and Green 1985, <i>Methylobacterium</i> Patt <i>et al.</i> 1976 (Approved Lists 1980) is an earlier heterotypic synonym of <a href="../p/protomonas.html">¤</a> <i>Protomonas</i> Urakami and Komagata 1984.
<br>
<span class="taxon-subhead">Reference:</span> BOUSFIELD (I.J.) and GREEN (P.N.): Reclassification of bacteria of the genus <i>Protomonas</i> Urakami and Komagata 1984 in the genus <i>Methylobacterium</i> (Patt, Cole, and Hanson) emend. Green and Bousfield 1983. <i>Int. J. Syst. Bacteriol.</i>, 1985, <b>35</b>, 209.
<br>
<a href="http://ijs.sgmjournals.org/cgi/reprint/35/2/209">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="adhaesivum" id="adhaesivum"></a>Methylobacterium</span> <span class="genusspecies">adhaesivum</span> Gallego <i>et al.</i> 2006, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20adhaesivum&restrict=1">StrainInfo.net</a>) strain AR27 = CCM 7305 = CECT 7069.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AM040156&cmd=Search&db=nuccore">AM040156</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. neut. adj. <i>adhaesivum</i>, adhering, forming aggregates.
<br>
<span class="taxon-subhead">Reference:</span> GALLEGO (V.), GARCIA (M.T.) and VENTOSA (A.): <i>Methylobacterium</i> <i>adhaesivum</i> sp. nov., a methylotrophic bacterium isolated from drinking water. <i>Int. J. Syst. Evol. Microbiol.</i>, 2006, <b>56</b>, 339-342.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.63966-0">Original article in IJSEM Online</a>
</p>
<p>
<span class="taxon-subhead">Note:</span> The epithet <i>adhaesivum</i> is a "N.L. neut. adj.", <b>not</b> a "L. neut. adj." as cited in the paper by Gallego <i>et al.</i> 2006.
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="aerolatum" id="aerolatum"></a>Methylobacterium</span> <span class="genusspecies">aerolatum</span> Weon <i>et al.</i> 2008, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20aerolatum&restrict=1">StrainInfo.net</a>) strain 5413S-11 = DSM 19013 = JCM 16406</font> = KACC 11766.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=EF174498&cmd=Search&db=nuccore">EF174498</a>.
<br>
<span class="taxon-subhead">Etymology:</span> Gr. n. <i>aer</i> <i>aeros</i>, air; L. part. adj. <i>latus</i> -<i>a</i> -<i>um</i>, carried; N.L. neut. part. adj. <i>aerolatum</i>, airborne.
<br>
<span class="taxon-subhead">Reference:</span> WEON (H.Y.), KIM (B.Y.), JOA (J.H.), SON (J.A.), SONG (M.H.), KWON (S.W.), GO (S.J.) and YOON (S.H.): <i>Methylobacterium</i> <i>iners</i> sp. nov. and <i>Methylobacterium</i> <i>aerolatum</i> sp. nov., isolated from air samples in Korea. <i>Int. J. Syst. Evol. Microbiol.</i>, 2008, <b>58</b>, 93-96.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.65047-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="aminovorans" id="aminovorans"></a>Methylobacterium</span> <span class="genusspecies">aminovorans</span> Urakami <i>et al.</i> 1993, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20aminovorans&restrict=1">StrainInfo.net</a>) strain TH-15 = ATCC 51358 = CIP 105328 = IFO (now NBRC) 15686 = JCM 8240 = VKM B-2145.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB175629&cmd=Search&db=nuccore">AB175629</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. n. <i>aminum</i>, amine; L. part. adj. <i>vorans</i>, devouring, eating; N.L. part. adj. <i>aminovorans</i>, amine devouring.
<br>
<span class="taxon-subhead">Reference:</span> URAKAMI (T.), ARAKI (H.), SUZUKI (K.I.) and KOMAGATA (K.): Further studies of the genus <i>Methylobacterium</i> and description of <i>Methylobacterium</i> <i>aminovorans</i> sp. nov. <i>Int. J. Syst. Bacteriol.</i>, 1993, <b>43</b>, 504-513.
<br>
<a href="http://ijs.sgmjournals.org/cgi/reprint/43/3/504">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="aquaticum" id="aquaticum"></a>Methylobacterium</span> <span class="genusspecies">aquaticum</span> Gallego <i>et al.</i> 2005, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20aquaticum&restrict=1">StrainInfo.net</a>) strain GR16 = CCM 7218 = CECT 5998 = CIP 108333 = DSM 16371.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AJ635303&cmd=Search&db=nuccore">AJ635303</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. neut. adj. <i>aquaticum</i>, living, growing, or found in the water, aquatic.
<br>
<span class="taxon-subhead">Reference:</span> GALLEGO (V.), GARCIA (M.T.) and VENTOSA (A.): <i>Methylobacterium</i> <i>hispanicum</i> sp. nov. and <i>Methylobacterium</i> <i>aquaticum</i> sp. nov., isolated from drinking water. <i>Int. J. Syst. Evol. Microbiol.</i>, 2005, <b>55</b>, 281-287.
<br>
<a href="http://ijs.sgmjournals.org/cgi/content/abstract/55/1/281">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="brachiatum" id="brachiatum"></a>Methylobacterium</span> <span class="genusspecies">brachiatum</span> Kato <i>et al.</i> 2008, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20brachiatum&restrict=1">StrainInfo.net</a>) strain B0021 = DSM 19569 = NBRC 103629 = NCIMB 14379.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB175649&cmd=Search&db=nuccore">AB175649</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. neut. adj. <i>brachiatum</i>, branched, referring to the presence of branched cells.
<br>
<span class="taxon-subhead">Reference:</span> KATO (Y.), ASAHARA (M.), GOTO (K.), KASAI (H.) and YOKOTA (A.): <i>Methylobacterium</i> <i>persicinum</i> sp. nov., <i>Methylobacterium</i> <i>komagatae</i> sp. nov., <i>Methylobacterium</i> <i>brachiatum</i> sp. nov., <i>Methylobacterium</i> <i>tardum</i> sp. nov. and <i>Methylobacterium</i> <i>gregans</i> sp. nov., isolated from freshwater. <i>Int. J. Syst. Evol. Microbiol.</i>, 2008, <b>58</b>, 1134-1141.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.65583-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p> <span class='genusspecies'><a name=brachythecii id='brachythecii'></a>Methylobacterium</span> <span class='genusspecies'>brachythecii</span> Tani and Sahin 2013, sp. nov.
<br> <span class='taxon-subhead'>Type strain:</span> (see also <a href='http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20brachythecii&restrict=1'>StrainInfo.net</a>) 99b=DSM 24105=NBRC 107710.
<br> <span class='taxon-subhead'>Sequence accession no. (16S rRNA) for the type strain:</span> <a href='http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB703239&cmd=Search&db=nuccore'>AB703239</a>.
<br> <span class='taxon-subhead'>Etymology:</span> N.L. gen. n. <i>brachythecium</i> of Rusty feather-moss <i>Brachythecium plumosum</i>, referring to the plant from which the type strain was isolated.
<br> <span class='taxon-subhead-source'>Source:</span> Plant.
<br> <span class='taxon-subhead'>Reference:</span> TANI, A. and SAHIN, N. 2013. <i>Methylobacterium haplocladii</i> sp. nov. and <i>Methylobacterium brachythecii</i> sp. nov., isolated from bryophytes. <i>Int. J. Syst. Evol. Microbiol.</i>, <b>63</b>, 3287-3292.
<br> <a href='http://dx.doi.org/10.1099/ijs.0.048215-0'>Original article in IJSEM Online</a> </p> <p> <a href='#r'><img border='0' src='../images/top.jpg' width='23' height='11' alt='image'></a> </p>
<p>
<span class="genusspecies"><a name="bullatum" id="bullatum"></a>Methylobacterium</span> <span class="genusspecies">bullatum</span> Hoppe <i>et al.</i> 2012, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20bullatum&restrict=1">StrainInfo.net</a>) strain F3.2 = DSM 21893 = LMG 24788.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=FJ268657&cmd=Search&db=nuccore">FJ268657</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. neut. adj. <i>bullatum</i>, furnished with a boss or stud, equipped with an adorned surface.
<br>
<span class="taxon-subhead">References:</span> VALIDATION LIST no. 145. <i>Int. J. Syst. Evol. Microbiol.</i>, 2012, <b>62</b>, 1017-1019. [HOPPE (T.), PETERS (K.) and SCHMIDT (F.): <i>Methylobacterium</i> <i>bullatum</i> sp. nov., a methylotrophic bacterium isolated from <i>Funaria</i> <i>hygrometrica. Syst. Appl. Microbiol.</i>, 2011, <b>34</b>, 482-486.]
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.043240-0">Validation List no. 145 in IJSEM Online</a> - <a href="http://dx.doi.org/10.1016/j.syapm.2010.12.005">Effective publication Online</a>
</p>
<p>
<span class="taxon-subhead">Note:</span> Based on the strain history of the type strain of <i>Methylobacterium</i> <i>bullatum</i>, it appears that strain F3.2 has also been used as the type strain of "<i>Methylobacterium</i> <i>funariae</i>" [see: SCHAUER (S.) and KUTSCHERA (U.): A novel growth-promoting microbe, <i>Methylobacterium</i> <i>funariae</i> sp. nov., isolated from the leaf surface of a common moss. <i>Plant</i> <i>Signal</i> <i>Behav.</i>, 2011, <b>6</b>, 510-515.]
<br>
<span class="taxon-subhead">Reference:</span> ASSOCIATE EDITOR, IJSEM: Validation List no. 145 (footnote ¶</span>). <i>Int. J. Syst. Evol. Microbiol.</i>, 2012, <b>62</b>, 1017-1019.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.043240-0">Validation List no. 145 in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="cerastii" id="cerastii"></a>Methylobacterium</span> <span class="genusspecies">cerastii</span> Wellner <i>et al.</i> 2012, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20cerastii&restrict=1">StrainInfo.net</a>) strain C15 = CCM 7788 = CCUG 60040 = DSM 23679.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=FR733885&cmd=Search&db=nuccore">FR733885</a>.<br>
<span class="taxon-subhead">Etymology:</span> N.L. n. <i>Cerastium</i>, a scientific genus name; N.L. gen. n. <i>cerastii</i>, of <i>Cerastium</i>, isolated from <i>Cerastium</i> <i>holosteoides</i>.
<br>
<span class="taxon-subhead">Reference:</span> </span> WELLNER (S.), LODDERS (N.) and KÄMPFER (P.): <i>Methylobacterium</i> <i>cerastii</i> sp. nov., isolated from the leaf surface of <i>Cerastium</i> <i>holosteoides. Int. J. Syst. Evol. Microbiol.</i>, 2012, <b>62</b>, 917-924.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.030767-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="chloromethanicum" id="chloromethanicum"></a>Methylobacterium</span> <span class="genusspecies">chloromethanicum</span> McDonald <i>et al.</i> 2001, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20chloromethanicum&restrict=1">StrainInfo.net</a>) strain CM4 = NCIMB 13688 = VKM B-2223.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=CP001298&cmd=Search&db=nuccore">CP001298</a> (complete genome).
<br>
<span class="taxon-subhead">Etymology:</span> Gr. adj. <i>chlôros</i>, green; N.L. pref. <i>chloro-</i>, referring to the chlorine radical; N.L. n. <i>methanum</i>, methane: L. masc. suff. -<i>icus</i>, suffix used with the sense of pertaining to; N.L. adj. <i>methanicus</i>, pertaining to methane, intended to mean methane (utilizing); N.L. neut. n. <i>chloromethanicum</i>, chloromethane (utilizing).
<br>
<span class="taxon-subhead">Reference:</span> McDONALD (I.R.), DORONINA (N.V.), TROTSENKO (Y.A.), McANULLA (C.) and MURRELL (J.C.): <i>Hyphomicrobium</i> <i>chloromethanicum</i> sp. nov. and <i>Methylobacterium</i> <i>chloromethanicum</i> sp. nov., chloromethane-utilizing bacteria isolated from a polluted environment. <i>Int. J. Syst. Evol. Microbiol.</i>, 2001, <b>51</b>, 119-122.
<br>
<a href="http://ijs.sgmjournals.org/cgi/content/abstract/51/1/119">Original article in IJSEM Online</a>
</p>
<p>
<span class="taxon-subhead">Note:</span> According to Kato <i>et al.</i> 2005, <i>Methylobacterium</i> <i>chloromethanicum</i> McDonald <i>et al.</i> 2001 is a later heterotypic synonym of <a href="#extorquens">¤</a> <i>Methylobacterium</i> <i>extorquens</i> (Urakami and Komagata 1984) Bousfield and Green 1985.
<br>
<span class="taxon-subhead">References:</span> List of Changes in Taxonomic Opinion no. 4. <i>Int. J. Syst. Evol. Microbiol.</i>, 2006, <b>56</b>, 1463. [KATO (Y.), ASAHARA (M.), ARAI (D.), GOTO (K.) and YOKOTA (A.): Reclassification of <i>Methylobacterium</i> <i>chloromethanicum</i> and <i>Methylobacterium</i> <i>dichloromethanicum</i> as later subjective synonyms of <i>Methylobacterium</i> <i>extorquens</i> and of <i>Methylobacterium</i> <i>lusitanum</i> as a later subjective synonym of <i>Methylobacterium</i> <i>rhodesianum. J. Gen. Appl. Microbiol.</i>, 2005, <b>51</b>, 287-299.]
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.64506-0">List of Changes in Taxonomic Opinion no. 4 in IJSEM Online</a> - <a href="http://dx.doi.org/10.2323/jgam.51.287">Effective publication Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="dankookense" id="dankookense"></a>Methylobacterium</span> <span class="genusspecies">dankookense</span> Lee <i>et al.</i> 2013, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20dankookense&restrict=1">StrainInfo.net</a>) strain SW08-7 = DSM 22415 = KCTC 22512.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=FJ155589&cmd=Search&db=nuccore">FJ155589</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. neut. adj. <i>dankookense</i>, of or belonging to Dankook University, where taxonomic studies on this species were performed.
<br>
<span class="taxon-subhead">References:</span> VALIDATION LIST no. 149. <i>Int. J. Syst. Evol. Microbiol.</i>, 2013, <b>63</b>, 1-5. [LEE (S.W.), OH (H.W.), LEE (K.H.) and AHN (T.Y.): <i>Methylobacterium</i> <i>dankookense</i> sp. nov., isolated from drinking water. <i>J. Microbiol.</i>, 2009, <b>47</b>, 716-720.]
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.049312-0">Validation List no. 149 in IJSEM Online</a> - <a href="http://dx.doi.org/10.1007/s12275-009-0126-6">Effective publication Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="dichloromethanicum" id="dichloromethanicum"></a>Methylobacterium</span> <span class="genusspecies">dichloromethanicum</span> Doronina <i>et al.</i> 2000, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20dichloromethanicum&restrict=1">StrainInfo.net</a>) strain DM4 = CIP 106787 = DSM 6343 = VKM B-2191.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB175631&cmd=Search&db=nuccore">AB175631</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. inseparable particle <i>dis</i> <i>di</i>, in two; Gr. adj. <i>chlôros</i>, green; N.L. pref. <i>chloro-</i>, referring to the chlorine radical; N.L. n. <i>methanum</i>, methane: L. masc. suff. -<i>icus</i>, suffix used with the sense of pertaining to; N.L. adj. <i>methanicus</i>, pertaining to methane, intended to mean methane (utilizing); N.L. neut. n. <i>dichloromethanicum</i>, dichloromethane (utilizing).
<br>
<span class="taxon-subhead">References:</span> VALIDATION LIST no. 77. <i>Int. J. Syst. Evol. Microbiol</i>. 2000, <b>50</b>, 1953. [DORONINA (N.V.), TROTSENKO (Y.A.), TOUROVA (T.P.), KUZNETSOV (B.B.) and LEISINGER (T.): <i>Methylopila</i> <i>helvetica</i> sp. nov. and <i>Methylobacterium</i> <i>dichloromethanicum</i> sp. nov. - novel aerobic facultatively methylotrophic bacteria utilizing dichloromethane. <i>Syst. Appl. Microbiol.</i>, 2000, <b>23</b>, 210-218.]
<br>
<a href="http://ijs.sgmjournals.org/cgi/reprint/50/6/1953">Validation List no. 77 in IJSEM Online (PDF Format)</a> - <a href="http://dx.doi.org/10.1016/S0723-2020(00)80007-7">Effective publication Online</a>
</p>
<p>
<span class="taxon-subhead">Note:</span> According to Kato <i>et al.</i> 2005, <i>Methylobacterium</i> <i>dichloromethanicum</i> Doronina <i>et al.</i> 2000 is a later heterotypic synonym of <a href="#extorquens">¤</a> <i>Methylobacterium</i> <i>extorquens</i> (Urakami and Komagata 1984) Bousfield and Green 1985.
<br>
<span class="taxon-subhead">References:</span> List of Changes in Taxonomic Opinion no. 4. <i>Int. J. Syst. Evol. Microbiol.</i>, 2006, <b>56</b>, 1463. [KATO (Y.), ASAHARA (M.), ARAI (D.), GOTO (K.) and YOKOTA (A.): Reclassification of <i>Methylobacterium</i> <i>chloromethanicum</i> and <i>Methylobacterium</i> <i>dichloromethanicum</i> as later subjective synonyms of <i>Methylobacterium</i> <i>extorquens</i> and of <i>Methylobacterium</i> <i>lusitanum</i> as a later subjective synonym of <i>Methylobacterium</i> <i>rhodesianum. J. Gen. Appl. Microbiol.</i>, 2005, <b>51</b>, 287-299.]
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.64506-0">List of Changes in Taxonomic Opinion no. 4 in IJSEM Online</a> - <a href="http://dx.doi.org/10.2323/jgam.51.287">Effective publication Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="extorquens" id="extorquens"></a>Methylobacterium</span> <span class="genusspecies">extorquens</span> (Urakami and Komagata 1984) Bousfield and Green 1985, comb. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20extorquens&restrict=1">StrainInfo.net</a>) strain TK 0001 = ATCC 43645 = CCUG 2084 = DSM 1337 = IAM 12631 = IFO (now NBRC) 15687 = JCM 2802 = NCCB 78015 = NCIB (now NCIMB) 9399 = VKM B-2064.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB175632&cmd=Search&db=nuccore">AB175632</a>.
<br>
<span class="taxon-subhead-basonym">Basonym:</span> <a href="../p/protomonas.html#extorquens">¤</a> <i>Protomonas</i> <i>extorquens</i> (<i>ex</i> Bassalik 1913) Urakami and Komagata 1984.
<br>
<span class="taxon-subhead-synonym">Other synonyms:</span> "<i>Bacillus</i> <i>extorquens</i>" Bassalik 1913, "<i>Vibrio</i> <i>extorquens</i>" (Bassalik 1913) Bhat and Barker 1948, "<i>Pseudomonas</i> <i>extorquens</i>" (Bassalik 1913) Krasil'nikov 1949, "<i>Flavobacterium</i> <i>extorquens</i>" (Bassalik 1913) Bassalik <i>et al.</i> 1960.
<br>
<span class="taxon-subhead">Etymology:</span> L. part. adj. <i>extorquens</i>, twisting out.
<br>
<span class="taxon-subhead">Reference:</span> BOUSFIELD (I.J.) and GREEN (P.N.): Reclassification of bacteria of the genus <i>Protomonas</i> Urakami and Komagata 1984 in the genus <i>Methylobacterium</i> (Patt, Cole, and Hanson) emend. Green and Bousfield 1983. <i>Int. J. Syst. Bacteriol.</i>, 1985, <b>35</b>, 209.
<br>
<a href="http://ijs.sgmjournals.org/cgi/reprint/35/2/209">Original article in IJSEM Online</a>
</p>
<p>
<span class="taxon-subhead">Note:</span> According to Kato <i>et al.</i> 2005, <i>Methylobacterium</i> <i>extorquens</i> (Urakami and Komagata 1984) Bousfield and Green 1985 is an earlier heterotypic synonym of <a href="#chloromethanicum">¤</a> <i>Methylobacterium</i> <i>chloromethanicum</i> McDonald <i>et al.</i> 2001, and an earlier heterotypic synonym of <a href="#dichloromethanicum">¤</a> <i>Methylobacterium</i> <i>dichloromethanicum</i> Doronina <i>et al.</i> 2000.
<br>
<span class="taxon-subhead">References:</span> List of Changes in Taxonomic Opinion no. 4. <i>Int. J. Syst. Evol. Microbiol.</i>, 2006, <b>56</b>, 1463. [KATO (Y.), ASAHARA (M.), ARAI (D.), GOTO (K.) and YOKOTA (A.): Reclassification of <i>Methylobacterium</i> <i>chloromethanicum</i> and <i>Methylobacterium</i> <i>dichloromethanicum</i> as later subjective synonyms of <i>Methylobacterium</i> <i>extorquens</i> and of <i>Methylobacterium</i> <i>lusitanum</i> as a later subjective synonym of <i>Methylobacterium</i> <i>rhodesianum. J. Gen. Appl. Microbiol.</i>, 2005, <b>51</b>, 287-299.]
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.64506-0">List of Changes in Taxonomic Opinion no. 4 in IJSEM Online</a> - <a href="http://dx.doi.org/10.2323/jgam.51.287">Effective publication Online</a>
</p>
<p><a name="extorquensemend" id="extorquensemend"></a><span class="arrow">→</span><span class="genusspecies"></span> <i>Methylobacterium</i> <i>extorquens</i> (Urakami and Komagata 1984) Bousfield and Green 1985 emend. Kato <i>et al.</i> 2008.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20extorquens&restrict=1">StrainInfo.net</a>) strain TK 0001 = ATCC 43645 = CCUG 2084 = DSM 1337 = IAM 12631 = NBRC 15687 = JCM 2802 = NCCB 78015 = NCIMB 9399 = VKM B-2064.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB175632&cmd=Search&db=nuccore">AB175632</a>.
<br>
<span class="taxon-subhead-basonym">Basonym:</span> <a href="../p/protomonas.html#extorquens">¤</a> <i>Protomonas</i> <i>extorquens</i> (<i>ex</i> Bassalik 1913) Urakami and Komagata 1984.
<br>
<span class="taxon-subhead-synonym">Other synonyms:</span> "<i>Bacillus</i> <i>extorquens</i>" Bassalik 1913, "<i>Vibrio</i> <i>extorquens</i>" (Bassalik 1913) Bhat and Barker 1948, "<i>Pseudomonas</i> <i>extorquens</i>" (Bassalik 1913) Krasil'nikov 1949, "<i>Flavobacterium</i> <i>extorquens</i>" (Bassalik 1913) Bassalik <i>et al.</i> 1960.
<br>
<span class="taxon-subhead">Etymology:</span> L. part. adj. <i>extorquens</i>, twisting out.
<br>
<span class="taxon-subhead">Reference:</span> KATO (Y.), ASAHARA (M.), GOTO (K.), KASAI (H.) and YOKOTA (A.): <i>Methylobacterium</i> <i>persicinum</i> sp. nov., <i>Methylobacterium</i> <i>komagatae</i> sp. nov., <i>Methylobacterium</i> <i>brachiatum</i> sp. nov., <i>Methylobacterium</i> <i>tardum</i> sp. nov. and <i>Methylobacterium</i> <i>gregans</i> sp. nov., isolated from freshwater. <i>Int. J. Syst. Evol. Microbiol.</i>, 2008, <b>58</b>, 1134-1141.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.65583-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="fujisawaense" id="fujisawaense"></a>Methylobacterium</span> <span class="genusspecies">fujisawaense</span> Green <i>et al.</i> 1988, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20fujisawaense&restrict=1">StrainInfo.net</a>) strain 0-31 of Kouno and Ozaki = ATCC 43884 = CIP 103775 = DSM 5686 = IFO (now NBRC) 15843 = JCM 10890 = NCIB (now NCIMB) 12417.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AJ250801&cmd=Search&db=nuccore">AJ250801</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. neut. adj. <i>fujisawaense</i>, pertaining to the Fujisawa region of Japan.
<br>
<span class="taxon-subhead">Reference:</span> GREEN (P.N.), BOUSFIELD (I.J.) and HOOD (D.): Three new <i>Methylobacterium</i> species: <i>M. rhodesianum</i> sp. nov., <i>M. zatmanii</i> sp. nov., and <i>M. fujisawaense</i> sp. nov. <i>Int. J. Syst. Bacteriol.</i>, 1988, <b>38</b>, 124-127.
<br>
<a href="http://ijs.sgmjournals.org/cgi/reprint/38/1/124">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="gnaphalii" id="gnaphalii"></a>Methylobacterium</span> <span class="genusspecies">gnaphalii</span> Tani <i>et al.</i> 2012, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20gnaphalii&restrict=1">StrainInfo.net</a>) strain 23e = DSM 24027 = NBRC 107716.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB627071&cmd=Search&db=nuccore">AB627071</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. gen. n. <i>gnaphalii</i>, of a cudweed <i>Gnaphalium</i> <i>spicatum</i>, referring to the leaves from which the type strain was isolated.
<br>
<span class="taxon-subhead">Reference:</span> TANI (A.), SAHIN (N.) and KIMBARA (K.): <i>Methylobacterium</i> <i>gnaphalii</i> sp. nov., isolated from leaves of <i>Gnaphalium</i> <i>spicatum. Int. J. Syst. Evol. Microbiol.</i>, 2012, <b>62</b>, 2602-2607.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.037713-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="goesingense" id="goesingense"></a>Methylobacterium</span> <span class="genusspecies">goesingense</span> Idris <i>et al.</i> 2012, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20goesingense&restrict=1">StrainInfo.net</a>) strain iEII3 = CCUG 56109 = DSM 21331.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AY364020&cmd=Search&db=nuccore">AY364020</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. neut. adj. <i>goesingense</i>, of or belonging to Goesing, Austria, the source of the type strain.
<br>
<span class="taxon-subhead">References:</span> VALIDATION LIST no. 148. <i>Int. J. Syst. Evol. Microbiol.</i>, 2012, <b>62</b>, 2549-2554. [IDRIS (R.), KUFFNER (M.), BODROSSY (L.), PUSCHENREITER (M.), MONCHY (S.), WENZEL (W.W.) and SESSITSCH (A.): Characterization of Ni-tolerant methylobacteria associated with the hyperaccumulating plant <i>Thlaspi</i> <i>goesingense</i> and description of <i>Methylobacterium</i> <i>goesingense</i> sp. nov. <i>Syst. Appl. Microbiol.</i>, 2006, <b>29</b>, 634-644.]
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.048033-0">Validation List no. 148 in IJSEM Online</a> - <a href="http://dx.doi.org/10.1016/j.syapm.2006.01.011">Effective publication Online</a>
</p>
<p>
<span class="taxon-subhead">Note:</span> The culture collection accession numbers DSM 21331 and CCUG 56109 have been provided at the time of request for valid publication of the name.
<br>
<span class="taxon-subhead">Reference:</span> ASSOCIATE EDITOR, IJSEM: Validation List no. 148 (footnote ***</span>). <i>Int. J. Syst. Evol. Microbiol.</i>, 2012, <b>62</b>, 2549-2554.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.048033-0">Validation List no. 148 in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="gossipiicola" id="gossipiicola"></a>Methylobacterium</span> <span class="genusspecies">gossipiicola</span> Madhaiyan <i>et al.</i> 2012, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20gossipiicola&restrict=1">StrainInfo.net</a>) strain Gh-105 = CCM 7572 = NRRL B-51692.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=EU912445&cmd=Search&db=nuccore">EU912445</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. n. <em>Gossipium,</em> a scientific botanical genus name; L. suff. -<em>cola,</em> inhabitant, dweller; N.L. n. <em>gossipiicola,</em> <em>Gossipium</em> dweller, referring to the isolation of the type strain from the cotton phyllosphere.
<br>
<span class="taxon-subhead">Reference:</span> MADHAIYAN (M.), POONGUZHALI (S.), SENTHILKUMAR (M.), LEE (J.S.) and LEE (K.C.): <i>Methylobacterium</i> <i>gossipiicola</i> sp. nov., a pink-pigmented, facultatively methylotrophic bacterium isolated from the cotton phyllosphere. <i>Int. J. Syst. Evol. Microbiol.</i>, 2012, <b>62</b>, 162-167.
<br></span> <a href="http://dx.doi.org/10.1099/ijs.0.030148-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="gregans" id="gregans"></a>Methylobacterium</span> <span class="genusspecies">gregans</span> Kato <i>et al.</i> 2008, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20gregans&restrict=1">StrainInfo.net</a>) strain 002-074 = DSM 19564 = NBRC 103626 = NCIMB 14376.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB252200&cmd=Search&db=nuccore">AB252200</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. part. adj. <i>gregans</i>, collecting into a flock or herd, referring to the floc formation in static media.
<br>
<span class="taxon-subhead">Reference:</span> KATO (Y.), ASAHARA (M.), GOTO (K.), KASAI (H.) and YOKOTA (A.): <i>Methylobacterium</i> <i>persicinum</i> sp. nov., <i>Methylobacterium</i> <i>komagatae</i> sp. nov., <i>Methylobacterium</i> <i>brachiatum</i> sp. nov., <i>Methylobacterium</i> <i>tardum</i> sp. nov. and <i>Methylobacterium</i> <i>gregans</i> sp. nov., isolated from freshwater. <i>Int. J. Syst. Evol. Microbiol.</i>, 2008, <b>58</b>, 1134-1141.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.65583-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p> <span class='genusspecies'><a name=haplocladii id='haplocladii'></a>Methylobacterium</span> <span class='genusspecies'>haplocladii</span> Tani and Sahin 2013, sp. nov.
<br> <span class='taxon-subhead'>Type strain:</span> (see also <a href='http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20haplocladii&restrict=1'>StrainInfo.net</a>) 87e=DSM 24195=NBRC 107714.
<br> <span class='taxon-subhead'>Sequence accession no. (16S rRNA) for the type strain:</span> <a href='http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB698691&cmd=Search&db=nuccore'>AB698691</a>.
<br> <span class='taxon-subhead'>Etymology:</span> N.L. gen. n. <i>haplocladii</i>, of the epilithic moss <i>Haplocladium microphyllum</i>, referring to the plant from which the type strain was isolated.
<br> <span class='taxon-subhead-source'>Source:</span> Plant.
<br> <span class='taxon-subhead'>Reference:</span> TANI, A. and SAHIN, N. 2013. <i>Methylobacterium haplocladii</i> sp. nov. and <i>Methylobacterium brachythecii</i> sp. nov., isolated from bryophytes. <i>Int. J. Syst. Evol. Microbiol.</i>, <b>63</b>, 3287-3292.
<br> <a href='http://dx.doi.org/10.1099/ijs.0.048215-0'>Original article in IJSEM Online</a> </p> <p> <a href='#r'><img border='0' src='../images/top.jpg' width='23' height='11' alt='image'></a> </p>
<p>
<span class="genusspecies"><a name="hispanicum" id="hispanicum"></a>Methylobacterium</span> <span class="genusspecies">hispanicum</span> Gallego <i>et al.</i> 2005, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20hispanicum&restrict=1">StrainInfo.net</a>) strain GP34 = CCM 7219 = CECT 5997 = CIP 108332 = DSM 16372.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AJ635304&cmd=Search&db=nuccore">AJ635304</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. neut. adj. <i>hispanicum</i>, of or belonging to Spain.
<br>
<span class="taxon-subhead">Reference:</span> GALLEGO (V.), GARCIA (M.T.) and VENTOSA (A.): <i>Methylobacterium</i> <i>hispanicum</i> sp. nov. and <i>Methylobacterium</i> <i>aquaticum</i> sp. nov., isolated from drinking water. <i>Int. J. Syst. Evol. Microbiol.</i>, 2005, <b>55</b>, 281-287.
<br>
<a href="http://ijs.sgmjournals.org/cgi/content/abstract/55/1/281">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="iners" id="iners"></a>Methylobacterium</span> <span class="genusspecies">iners</span> Weon <i>et al.</i> 2008, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20iners&restrict=1">StrainInfo.net</a>) strain 5317S-33 = DSM 19015 = JCM 16407</font> = KACC 11765.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=EF174497&cmd=Search&db=nuccore">EF174497</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. neut. adj. <i>iners</i>, inactive, lazy.
<br>
<span class="taxon-subhead">Reference:</span> WEON (H.Y.), KIM (B.Y.), JOA (J.H.), SON (J.A.), SONG (M.H.), KWON (S.W.), GO (S.J.) and YOON (S.H.): <i>Methylobacterium</i> <i>iners</i> sp. nov. and <i>Methylobacterium</i> <i>aerolatum</i> sp. nov., isolated from air samples in Korea. <i>Int. J. Syst. Evol. Microbiol.</i>, 2008, <b>58</b>, 93-96.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.65047-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="isbiliense" id="isbiliense"></a>Methylobacterium</span> <span class="genusspecies">isbiliense</span> Gallego <i>et al.</i> 2005, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20isbiliense&restrict=1">StrainInfo.net</a>) strain AR24 = CCM 7304 = CECT 7068.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AJ888239&cmd=Search&db=nuccore">AJ888239</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. neut. adj. <i>isbiliense</i>, from Isbilia, the old name for the city of Sevilla, Spain, from where the bacterium was isolated.
<br>
<span class="taxon-subhead">Reference:</span> GALLEGO (V.), GARCÍA (M.T.) and VENTOSA (A.): <i>Methylobacterium</i> <i>isbiliense</i> sp. nov., isolated from the drinking water system of Sevilla, Spain. <i>Int. J. Syst. Evol. Microbiol.</i>, 2005, <b>55</b>, 2333-2337.
<br>
<a href="http://ijs.sgmjournals.org/cgi/content/abstract/55/6/2333">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="jeotgali" id="jeotgali"></a>Methylobacterium</span> <span class="genusspecies">jeotgali</span> Aslam <i>et al.</i> 2007, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20jeotgali&restrict=1">StrainInfo.net</a>) strain S2R03-9 = KCTC 12671 = LMG 23639.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=nucleotide&cmd=search&term=DQ471331">DQ471331</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. gen. n. <i>jeotgali</i>, of jeotgal, a traditional Korean fermented seafood, from which the type strain was isolated.
<br>
<span class="taxon-subhead">Reference:</span> ASLAM (Z.), LEE (C.S.), KIM (K.H.), IM (W.T.), TEN (L.N.) and LEE (S.T.): <i>Methylobacterium</i> <i>jeotgali</i> sp. nov., a non-pigmented, facultatively methylotrophic bacterium isolated from jeotgal, a traditional Korean fermented seafood. <i>Int. J. Syst. Evol. Microbiol.</i>, 2007, <b>57</b>, 566-571.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.64625-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="komagatae" id="komagatae"></a>Methylobacterium</span> <span class="genusspecies">komagatae</span> Kato <i>et al.</i> 2008, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20komagatae&restrict=1">StrainInfo.net</a>) strain 002-079 = DSM 19563 = NBRC 103627 = NCIMB 14377.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB252201&cmd=Search&db=nuccore">AB252201</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. masc. gen. n. <i>komagatae</i>, named after Dr Kazuo Komagata, in honour of his significant contributions to the study of facultatively methylotrophic bacteria.
<br>
<span class="taxon-subhead">Reference:</span> KATO (Y.), ASAHARA (M.), GOTO (K.), KASAI (H.) and YOKOTA (A.): <i>Methylobacterium</i> <i>persicinum</i> sp. nov., <i>Methylobacterium</i> <i>komagatae</i> sp. nov., <i>Methylobacterium</i> <i>brachiatum</i> sp. nov., <i>Methylobacterium</i> <i>tardum</i> sp. nov. and <i>Methylobacterium</i> <i>gregans</i> sp. nov., isolated from freshwater. <i>Int. J. Syst. Evol. Microbiol.</i>, 2008, <b>58</b>, 1134-1141.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.65583-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="longum" id="longum"></a>Methylobacterium</span> <span class="genusspecies">longum</span> Knief <i>et al.</i> 2012, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20longum&restrict=1">StrainInfo.net</a>) strain 440 = CECT 7806 = DSM 23933.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=FN868949&cmd=Search&db=nuccore">FN868949</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. neut. adj. <i>longum</i>, long; because of the formation of long rods.
<br>
<span class="taxon-subhead">References:</span> VALIDATION LIST no. 145. <i>Int. J. Syst. Evol. Microbiol.</i>, 2012, <b>62</b>, 1017-1019. [KNIEF (C.), DENGLER (V.), BODELIER (P.L.E.) and VORHOLT (J.A.): Characterization of <i>Methylobacterium</i> strains isolated from the phyllosphere and description of <i>Methylobacterium</i> <i>longum</i> sp. nov. <i>Antonie</i> <i>van</i> <i>Leeuwenhoek</i>, 2012, <b>101</b>, 169-183.]
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.043240-0">Validation List no. 145 in IJSEM Online</a> - <a href="http://dx.doi.org/10.1007/s10482-011-9650-6">Effective publication Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="lusitanum" id="lusitanum"></a>Methylobacterium</span> <span class="genusspecies">lusitanum</span> Doronina <i>et al.</i> 2002, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20lusitanum&restrict=1">StrainInfo.net</a>) strain RXM = DSM 14457 = NCIMB 13779 = VKM B-2239.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB175635&cmd=Search&db=nuccore">AB175635</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. neut. adj. <i>lusitanum</i>, of <i>Lusitania</i>, the Latin name of Portugal.
<br>
<span class="taxon-subhead">Reference:</span> DORONINA (N.V.), TROTSENKO (Y.A.), KUZNETSOV (B.B.), TOUROVA (T.P.) and SALKINOJA-SALONEN (M.S.): <i>Methylobacterium</i> <i>suomiense</i> sp. nov. and <i>Methylobacterium</i> <i>lusitanum</i> sp. nov., aerobic, pink-pigmented, facultatively methylotrophic bacteria. <i>Int. J. Syst. Evol. Microbiol.</i>, 2002, <b>52</b>, 773-776.
<br>
<a href="http://ijs.sgmjournals.org/cgi/content/abstract/52/3/773">Original article in IJSEM Online</a>
</p>
<p>
<span class="taxon-subhead">Note:</span> According to Kato <i>et al.</i> 2005, <i>Methylobacterium</i> <i>lusitanum</i> Doronina <i>et al.</i> 2002 is a later heterotypic synonym of <a href="#rhodesianum">¤</a> <i>Methylobacterium</i> <i>rhodesianum</i> Green <i>et al.</i> 1988.
<br>
<span class="taxon-subhead">References:</span> List of Changes in Taxonomic Opinion no. 4. <i>Int. J. Syst. Evol. Microbiol.</i>, 2006, <b>56</b>, 1463. [KATO (Y.), ASAHARA (M.), ARAI (D.), GOTO (K.) and YOKOTA (A.): Reclassification of <i>Methylobacterium</i> <i>chloromethanicum</i> and <i>Methylobacterium</i> <i>dichloromethanicum</i> as later subjective synonyms of <i>Methylobacterium</i> <i>extorquens</i> and of <i>Methylobacterium</i> <i>lusitanum</i> as a later subjective synonym of <i>Methylobacterium</i> <i>rhodesianum. J. Gen. Appl. Microbiol.</i>, 2005, <b>51</b>, 287-299.]
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.64506-0">List of Changes in Taxonomic Opinion no. 4 in IJSEM Online</a> - <a href="http://dx.doi.org/10.2323/jgam.51.287">Effective publication Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="marchantiae" id="marchantiae"></a>Methylobacterium</span> <span class="genusspecies">marchantiae</span> Schauer <i>et al.</i> 2011, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20marchantiae&restrict=1">StrainInfo.net</a>) strain JT1 = CCUG 56108 = DSM 21328.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=FJ157976&cmd=Search&db=nuccore">FJ157976</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. gen. n. <i>marchantiae</i>, of <i>Marchantia</i>, referring to the isolation of the type strain from a free-living thallus of the liverwort <i>Marchantia</i> <i>polymorpha</i> L.
<br>
<span class="taxon-subhead">Reference:</span> SCHAUER (S.), KÄMPFER (P.), WELLNER (S.), SPRÖER (C.) and KUTSCHERA (U.): <i>Methylobacterium</i> <i>marchantiae</i> sp. nov., a pink-pigmented, facultatively methylotrophic bacterium isolated from the thallus of a liverwort. <i>Int. J. Syst. Evol. Microbiol.</i>, 2011, <b>61</b>, 870-876.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.021915-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="mesophilicum" id="mesophilicum"></a>Methylobacterium</span> <span class="genusspecies">mesophilicum</span> (Austin and Goodfellow 1979) Green and Bousfield 1983, comb. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20mesophilicum&restrict=1">StrainInfo.net</a>) strain A47 = ATCC 29983 = CCUG 16482 = CIP 101129 = DSM 1708 = ICPB 4095 = IFO (now NBRC) 15688 = JCM 2829 = LMG 5275 = NCIB (now NCIMB) 11561 = NRRL B-14246.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB175636&cmd=Search&db=nuccore">AB175636</a>.
<br>
<span class="taxon-subhead-basonym">Basonym:</span> <a href="../p/pseudomonas.html#mesophilica">¤</a> <i>Pseudomonas</i> <i>mesophilica</i> Austin and Goodfellow 1979 (Approved Lists 1980).
<br>
<span class="taxon-subhead">Etymology:</span> Gr. adj. <i>mesos</i>, middle; Gr. adj. <i>philikos</i> -<i>ê</i> -<i>on</i>, friendly; N.L. neut. adj. <i>mesophilicum</i>, friendly to the middle, because of its preference for moderate temperatures.
<br>
<span class="taxon-subhead">Reference:</span> GREEN (P.N.) and BOUSFIELD (I.J.): Emendation of <i>Methylobacterium</i> Patt, Cole, and Hanson 1976; <i>Methylobacterium</i> <i>rhodinum</i> (Heumann 1962) comb. nov. corrig.; <i>Methylobacterium</i> <i>radiotolerans</i> (Ito and Iizuka 1971) comb. nov., corrig.; and <i>Methylobacterium</i> <i>mesophilicum</i> (Austin and Goodfellow 1979) comb. nov. <i>Int. J. Syst. Bacteriol.</i>, 1983, <b>33</b>, 875-877.
<br>
<a href="http://ijs.sgmjournals.org/cgi/reprint/33/4/875">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="nodulans" id="nodulans"></a>Methylobacterium</span> <span class="genusspecies">nodulans</span> Jourand <i>et al.</i> 2004, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20nodulans&restrict=1">StrainInfo.net</a>) strain CNCM I 2342 = LMG 21967 = ORS 2060.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AF220763&cmd=Search&db=nuccore">AF220763</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. part. adj. <i>nodulans</i>, nodulating, expressing the original feature of strains to induce nitrogen-fixing nodules on roots of legume plants.
<br>
<span class="taxon-subhead">Reference:</span> JOURAND (P.), GIRAUD (E.), BÉNA (G.), SY (A.), WILLEMS (A.), GILLIS (M.), DREYFUS (B.) and DE LAJUDIE (P.): <i>Methylobacterium</i> <i>nodulans</i> sp. nov., for a group of aerobic, facultatively methylotrophic, legume root-nodule-forming and nitrogen-fixing bacteria. <i>Int. J. Syst. Evol. Microbiol.</i>, 2004, <b>54</b>, 2269-2273.
<br>
<a href="http://ijs.sgmjournals.org/cgi/content/abstract/54/6/2269">Original article in IJSEM Online</a>
</p>
<p>
<span class="taxon-subhead">Note:</span> CNCM is solely set up to deal with deposits on a confidential basis (i.e. patent deposits under the Budapest Treaty). Strain CNCM I 2342 is probably a patent deposit.
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="organophilum" id="organophilum"></a>Methylobacterium</span> <span class="genusspecies">organophilum</span> Patt <i>et al.</i> 1976, <i>species</i>. (Type species of the genus).
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20organophilum&restrict=1">StrainInfo.net</a>) strain ATCC 27886 = CIP 101049 = DSM 760 = HAMBI 2263 = IFO (now NBRC) 15689 = JCM 2833 = LMG 6083 = NCCB 78041 = VKM B-2066.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB175638&cmd=Search&db=nuccore">AB175638</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. pref. <i>organo</i>- (from Gr. adj. <i>organikos</i>, of or pertaining to an organ), pertaining to organic chemical compounds; N.L. adj. <i>philus</i> -<i>a</i> -<i>um</i> (from Gr. adj. <i>philos</i> -<i>ê</i> -<i>on</i>), friend, loving; N.L. neut. adj. <i>organophilum</i>, intended to mean preferring complex carbon sources.
<br>
<span class="taxon-subhead">References:</span> SKERMAN (V.B.D.), McGOWAN (V.) and SNEATH (P.H.A.) (editors): Approved Lists of Bacterial Names. <i>Int. J. Syst. Bacteriol.</i>, 1980, <b>30</b>, 225-420 (<a href="http://ijs.sgmjournals.org/cgi/reprint/30/1/225">Approved Lists of Bacterial Names in IJSEM Online</a> - <a href="http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=bacname">Approved Lists of Bacterial Names Amended edition</a>). [<a href="http://ijs.sgmjournals.org/cgi/reprint/26/2/226">PATT (T.E.), COLE (G.C.) and HANSON (R.S.): <i>Methylobacterium</i>, a new genus of facultatively methylotrophic bacteria. <i>International</i> <i>Journal</i> <i>of</i> <i>Systematic</i> <i>Bacteriology</i>, 1976, <b>26</b>, 226-229</a>.]
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="oryzae" id="oryzae"></a>Methylobacterium</span> <span class="genusspecies">oryzae</span> Madhaiyan <i>et al.</i> 2007, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20oryzae&restrict=1">StrainInfo.net</a>) strain CBMB20 = DSM 18207 = JCM 16405</font> = KACC 11585 = LMG 23582.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=nucleotide&cmd=search&term=AY683045">AY683045</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. gen. n. <i>oryzae</i>, of rice, from which the type strain was isolated.
<br>
<span class="taxon-subhead">Reference:</span> MADHAIYAN (M.), KIM (B.Y.), POONGUZHALI (S.), KWON (S.W.), SONG (M.H.), RYU (J.H.), GO (S.J.), KOO (B.S.) and SA (T.M.): <i>Methylobacterium</i> <i>oryzae</i> sp. nov., an aerobic, pink-pigmented, facultatively methylotrophic, 1-aminocyclopropane-1-carboxylate deaminase-producing bacterium isolated from rice. <i>Int. J. Syst. Evol. Microbiol.</i>, 2007, <b>57</b>, 326-331.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.64603-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="oxalidis" id="oxalidis"></a>Methylobacterium</span> <span class="genusspecies">oxalidis</span> Tani <i>et al.</i> 2012, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20oxalidis&restrict=1">StrainInfo.net</a>) strain 35a = DSM 24028 = NBRC 107715.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB607860&cmd=Search&db=nuccore">AB607860</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. n. <i>oxalis</i> -<i>idis</i>, a sorrel, and also a scientific generic name (<i>Oxalis</i>); L. gen. n. <i>oxalidis</i>, of a sorrel <i>Oxalis</i> <i>corniculata</i>, referring to the leaves from which the type strain was isolated.
<br>
<span class="taxon-subhead">Reference:</span> TANI (A.), SAHIN (N.) and KIMBARA (K.): <i>Methylobacterium</i> <i>oxalidis</i> sp. nov., isolated from leaves of <i>Oxalis</i> <i>corniculata. Int. J. Syst. Evol. Microbiol.</i>, 2012, <b>62</b>, 1647-1652.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.033019-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="persicinum" id="persicinum"></a>Methylobacterium</span> <span class="genusspecies">persicinum</span> Kato <i>et al.</i> 2008, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20persicinum&restrict=1">StrainInfo.net</a>) strain 002-165 = DSM 19562 = NBRC 103628 = NCIMB 14378.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB252202&cmd=Search&db=nuccore">AB252202</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. neut. adj. <i>persicinum</i>, peach-coloured, because of its pink colour.
<br>
<span class="taxon-subhead">Reference:</span> KATO (Y.), ASAHARA (M.), GOTO (K.), KASAI (H.) and YOKOTA (A.): <i>Methylobacterium</i> <i>persicinum</i> sp. nov., <i>Methylobacterium</i> <i>komagatae</i> sp. nov., <i>Methylobacterium</i> <i>brachiatum</i> sp. nov., <i>Methylobacterium</i> <i>tardum</i> sp. nov. and <i>Methylobacterium</i> <i>gregans</i> sp. nov., isolated from freshwater. <i>Int. J. Syst. Evol. Microbiol.</i>, 2008, <b>58</b>, 1134-1141.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.65583-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="phyllosphaerae" id="phyllosphaerae"></a>Methylobacterium</span> <span class="genusspecies">phyllosphaerae</span> Madhaiyan <i>et al.</i> 2009, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20phyllosphaerae&restrict=1">StrainInfo.net</a>) strain CBMB27 = DSM 19779 = JCM 16408</font> = KACC 11716 = LMG 24361.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=EF126746&cmd=Search&db=nuccore">EF126746</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. n. <i>phyllosphaera</i>, phyllosphere; N.L. gen. n. <i>phyllosphaerae</i>, of the phyllosphere.
<br>
<span class="taxon-subhead">Reference:</span> MADHAIYAN (M.), POONGUZHALI (S.), KWON (S.W.) and SA (T.M.): <i>Methylobacterium</i> <i>phyllosphaerae</i> sp. nov., a pink-pigmented, facultative methylotroph from the phyllosphere of rice. <i>Int. J. Syst. Evol. Microbiol.</i>, 2009, <b>59</b>, 22-27.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.001693-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="platani" id="platani"></a>Methylobacterium</span> <span class="genusspecies">platani</span> Kang <i>et al.</i> 2007, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20platani&restrict=1">StrainInfo.net</a>) strain PMB02 = JCM 14648 = KCTC 12901.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=EF426729&cmd=Search&db=nuccore">EF426729</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. gen. n. <i>platani</i>, plane-tree, of <i>Platanus</i> <i>orientalis</i>, referring to the tree species from which the micro-organism was isolated.
<br>
<span class="taxon-subhead">Reference:</span> KANG (Y.S.), KIM (J.), SHIN (H.D.), NAM (Y.D.), BAE (J.W.), JEON (C.O.) and PARK (W.): <i>Methylobacterium</i> <i>platani</i> sp. nov., isolated from a leaf of the tree <i>Platanus</i> <i>orientalis. Int. J. Syst. Evol. Microbiol.</i>, 2007, <b>57</b>, 2849-2853.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.65262-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="podarium" id="podarium"></a>Methylobacterium</span> <span class="genusspecies">podarium</span> Anesti <i>et al.</i> 2006, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20podarium&restrict=1">StrainInfo.net</a>) strain FM4 = ATCC BAA-547 = DSM 15083.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AF514774&cmd=Search&db=nuccore">AF514774</a>.
<br>
<span class="taxon-subhead">Etymology:</span> Gr. n. <i>pos</i> <i>podos</i>, the foot; L. suff. -<i>arius</i> -<i>a</i> -<i>um</i>, adjectival suffix used with the sense of belonging to; N.L. neut. adj. <i>podarium</i>, belonging to the foot, isolated of the normal foot microflora of healthy individuals.
<br>
<span class="taxon-subhead">References:</span> VALIDATION LIST no. 111. <i>Int. J. Syst. Evol. Microbiol.</i>, 2006, <b>56</b>, 2025-2027. [ANESTI (V.), VOHRA (J.), GOONETILLEKA (S.), McDONALD (I.R.), STRÄUBLER (B.), STACKEBRANDT (E.), KELLY (D.P.) and WOOD (A.P.): Molecular detection and isolation of facultatively methylotrophic bacteria, including <i>Methylobacterium</i> <i>podarium</i> sp. nov., from the human foot microflora. <i>Environ. Microbiol.</i>, 2004, <b>6</b>, 820-830.]
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.64643-0">Validation List no. 111 in IJSEM Online</a> - <a href="http://dx.doi.org/10.1111/j.1462-2920.2004.00623.x">Effective publication Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="populi" id="populi"></a>Methylobacterium</span> <span class="genusspecies">populi</span> Van Aken <i>et al.</i> 2004, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20populi&restrict=1">StrainInfo.net</a>) strain BJ001 = ATCC BAA-705 = NCIMB 13946.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=CP001029&cmd=Search&db=nuccore">CP001029</a> (complete genome).
<br>
<span class="taxon-subhead">Etymology:</span> L. gen. fem. n. <i>populi</i>, of poplar.
<br>
<span class="taxon-subhead">Reference:</span> VAN AKEN (B.), PERES (C.M.), LAFFERTY DOTY (S.), YOON (J.M.) and SCHNOOR (J.L.): <i>Methylobacterium</i> <i>populi</i> sp. nov., a novel aerobic, pink-pigmented, facultatively methylotrophic, methane-utilizing bacterium isolated from poplar trees (<i>Populus</i> <i>deltoides</i> x <i>nigra</i> DN34). <i>Int. J. Syst. Evol. Microbiol.</i>, 2004, <b>54</b>, 1191-1196.
<br>
<a href="http://ijs.sgmjournals.org/cgi/content/abstract/54/4/1191">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="radiotolerans" id="radiotolerans"></a>Methylobacterium</span> <span class="genusspecies">radiotolerans</span> corrig. (Ito and Iizuka 1971) Green and Bousfield 1983, comb. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20radiotolerans&restrict=1">StrainInfo.net</a>) strain ATCC 27329 = CIP 101128 = DSM 1819 = IFO (now NBRC) 15690 = JCM 2831 = LMG 2269 = NCIB (now NCIMB) 10815 = VKM B-2144.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=D32227&cmd=Search&db=nuccore">D32227</a>, <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=CP001001&cmd=Search&db=nuccore">CP001001</a> (complete genome).</span>
<br>
<span class="taxon-subhead-basonym">Basonym:</span> <a href="../p/pseudomonas.html#radiora">¤</a> <i>Pseudomonas</i> <i>radiora</i> Ito and Iizuka 1971 (Approved Lists 1980).
<br>
<span class="taxon-subhead">Etymology:</span> N.L. pref. <i>radio</i>- (from L. n. <i>radius</i>, a beam, ray), pertaining to radiation; L. part. adj. <i>tolerans</i>, tolerating; N.L. part. adj. <i>radiotolerans</i>, tolerating radiation.
<br>
<span class="taxon-subhead">Reference:</span> GREEN (P.N.) and BOUSFIELD (I.J.): Emendation of <i>Methylobacterium</i> Patt, Cole, and Hanson 1976; <i>Methylobacterium</i> <i>rhodinum</i> (Heumann 1962) comb. nov. corrig.; <i>Methylobacterium</i> <i>radiotolerans</i> (Ito and Iizuka 1971) comb. nov., corrig.; and <i>Methylobacterium</i> <i>mesophilicum</i> (Austin and Goodfellow 1979) comb. nov. <i>Int. J. Syst. Bacteriol.</i>, 1983, <b>33</b>, 875-877.
<br>
<a href="http://ijs.sgmjournals.org/cgi/reprint/33/4/875">Original article in IJSEM Online</a>
</p>
<p>
<span class="taxon-subhead">Note:</span> In 1983, Green and Bousfield corrected the specific epithet, <i>radiora</i> (<i>sic</i>), whose etymology is uncertain.
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="rhodesianum" id="rhodesianum"></a>Methylobacterium</span> <span class="genusspecies">rhodesianum</span> Green <i>et al.</i> 1988, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20rhodesianum&restrict=1">StrainInfo.net</a>) strain <i>Pseudomonas</i> strain 1 of Rock <i>et al.</i> = ATCC 43882 = CIP 103771 = DSM 5687 = IFO (now NBRC) 15844 = JCM 10891 = NCIB (now NCIMB) 12249 = VKM B-2142.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB175642&cmd=Search&db=nuccore">AB175642</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. neut. adj. <i>rhodesianum</i>, named after the British taxonomist Muriel Rhodes-Roberts.
<br>
<span class="taxon-subhead">Reference:</span> GREEN (P.N.), BOUSFIELD (I.J.) and HOOD (D.): Three new <i>Methylobacterium</i> species: <i>M. rhodesianum</i> sp. nov., <i>M. zatmanii</i> sp. nov., and <i>M. fujisawaense</i> sp. nov. <i>Int. J. Syst. Bacteriol.</i>, 1988, <b>38</b>, 124-127.
<br>
<a href="http://ijs.sgmjournals.org/cgi/reprint/38/1/124">Original article in IJSEM Online</a>
</p>
<p>
<span class="taxon-subhead">Note:</span> According to Kato <i>et al.</i> 2005, <i>Methylobacterium</i> <i>rhodesianum</i> Green <i>et al.</i> 1988 is an earlier heterotypic synonym of <a href="#lusitanum">¤</a> <i>Methylobacterium</i> <i>lusitanum</i> Doronina <i>et al.</i> 2002.
<br>
<span class="taxon-subhead">References:</span> List of Changes in Taxonomic Opinion no. 4. <i>Int. J. Syst. Evol. Microbiol.</i>, 2006, <b>56</b>, 1463. [KATO (Y.), ASAHARA (M.), ARAI (D.), GOTO (K.) and YOKOTA (A.): Reclassification of <i>Methylobacterium</i> <i>chloromethanicum</i> and <i>Methylobacterium</i> <i>dichloromethanicum</i> as later subjective synonyms of <i>Methylobacterium</i> <i>extorquens</i> and of <i>Methylobacterium</i> <i>lusitanum</i> as a later subjective synonym of <i>Methylobacterium</i> <i>rhodesianum. J. Gen. Appl. Microbiol.</i>, 2005, <b>51</b>, 287-299.]
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.64506-0">List of Changes in Taxonomic Opinion no. 4 in IJSEM Online</a> - <a href="http://dx.doi.org/10.2323/jgam.51.287">Effective publication Online</a>
</p>
<p><a name="rhodesianumemend" id="rhodesianumemend"></a><span class="arrow">→</span><span class="genusspecies"></span> <i>Methylobacterium</i> <i>rhodesianum</i> Green <i>et al.</i> 1988 emend. Kato <i>et al.</i> 2008.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20rhodesianum&restrict=1">StrainInfo.net</a>) strain <i>Pseudomonas</i> strain 1 of Rock <i>et al.</i> = ATCC 43882 = CIP 103771 = DSM 5687 = NBRC 15844 = JCM 10891 = NCIMB 12249 = VKM B-2142.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB175642&cmd=Search&db=nuccore">AB175642</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. neut. adj. <i>rhodesianum</i>, named after the British taxonomist Muriel Rhodes-Roberts.
<br>
<span class="taxon-subhead">Reference:</span> KATO (Y.), ASAHARA (M.), GOTO (K.), KASAI (H.) and YOKOTA (A.): <i>Methylobacterium</i> <i>persicinum</i> sp. nov., <i>Methylobacterium</i> <i>komagatae</i> sp. nov., <i>Methylobacterium</i> <i>brachiatum</i> sp. nov., <i>Methylobacterium</i> <i>tardum</i> sp. nov. and <i>Methylobacterium</i> <i>gregans</i> sp. nov., isolated from freshwater. <i>Int. J. Syst. Evol. Microbiol.</i>, 2008, <b>58</b>, 1134-1141.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.65583-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="rhodinum" id="rhodinum"></a>Methylobacterium</span> <span class="genusspecies">rhodinum</span> corrig. (Heumann 1962) Green and Bousfield 1983, comb. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20rhodinum&restrict=1">StrainInfo.net</a>) strain ATCC 14821 = CIP 101127 = DSM 2163 = IFO (now NBRC) 15691 = JCM 2811 = LMG 2275 = NCIB (now NCIMB) 9421 = VKM B-2065.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB175644&cmd=Search&db=nuccore">AB175644</a>.
<br>
<span class="taxon-subhead-basonym">Basonym:</span> <a href="../p/pseudomonas.html#rhodos">¤</a> <i>Pseudomonas</i> <i>rhodos</i> Heumann 1962 (Approved Lists 1980).
<br>
<span class="taxon-subhead">Etymology:</span> N.L. neut. adj. <i>rhodinum</i> (from Gr. neut. adj. <i>rhodinon</i>, pink), rosy, because of its pink color.
<br>
<span class="taxon-subhead">Reference:</span> GREEN (P.N.) and BOUSFIELD (I.J.): Emendation of <i>Methylobacterium</i> Patt, Cole, and Hanson 1976; <i>Methylobacterium</i> <i>rhodinum</i> (Heumann 1962) comb. nov. corrig.; <i>Methylobacterium</i> <i>radiotolerans</i> (Ito and Iizuka 1971) comb. nov., corrig.; and <i>Methylobacterium</i> <i>mesophilicum</i> (Austin and Goodfellow 1979) comb. nov. <i>Int. J. Syst. Bacteriol.</i>, 1983, <b>33</b>, 875-877.
<br>
<a href="http://ijs.sgmjournals.org/cgi/reprint/33/4/875">Original article in IJSEM Online</a>
</p>
<p>
<span class="taxon-subhead">Note:</span> In 1983, Green and Bousfield corrected the specific epithet, <i>rhodos</i> (<i>sic</i>) to <i>rhodinum</i>.
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="salsuginis" id="salsuginis"></a>Methylobacterium</span> <span class="genusspecies">salsuginis</span> Wang <i>et al.</i> 2007, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20salsuginis&restrict=1">StrainInfo.net</a>) strain MR = CGMCC 1.6474 = NCCB 100140.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=EF015478&cmd=Search&db=nuccore">EF015478</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. gen. n. <i>salsuginis</i>, of brine, seawater.
<br>
<span class="taxon-subhead">Reference:</span> WANG (X.), SAHR (F.), XUE (T.) and SUN (B.): <i>Methylobacterium</i> <i>salsuginis</i> sp. nov., isolated from seawater. <i>Int. J. Syst. Evol. Microbiol.</i>, 2007, <b>57</b>, 1699-1703.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.64877-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="soli" id="soli"></a>Methylobacterium</span> <span class="genusspecies">soli</span> Cao <i>et al.</i> 2013, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20soli&restrict=1">StrainInfo.net</a>) strain YIM 48816 = CCTCC AA 208027 = KCTC 22810.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=EU860984&cmd=Search&db=nuccore">EU860984</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. gen. n. <i>soli</i>, of soil, the source of the organism.
<br>
<span class="taxon-subhead">References:</span> VALIDATION LIST no. 149. <i>Int. J. Syst. Evol. Microbiol.</i>, 2013, <b>63</b>, 1-5. [CAO (Y.R.), WANG (Q.), JIN (R.X.), TANG (S.K.), JIANG (Y.), HE (W.X.), LAI (H.X.), XU (L.H.) and JIANG (C.L.): <i>Methylobacterium</i> <i>soli</i> sp. nov. a methanol-utilizing bacterium isolated from the forest soil. <i>Antonie</i> <i>van</i> <i>Leeuwenhoek</i>, 2011, <b>99</b>, 629-634.]
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.049312-0">Validation List no. 149 in IJSEM Online</a> - <a href="http://dx.doi.org/10.1007/s10482-010-9535-0">Effective publication Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="suomiense" id="suomiense"></a>Methylobacterium</span> <span class="genusspecies">suomiense</span> Doronina <i>et al.</i> 2002, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20suomiense&restrict=1">StrainInfo.net</a>) strain F20 = DSM 14458 = NCIMB 13778 = VKM B-2238.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB175645&cmd=Search&db=nuccore">AB175645</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. neut. adj. <i>suomiense</i>, pertaining to Suomi, the Finnish word for Finland.
<br>
<span class="taxon-subhead">Reference:</span> DORONINA (N.V.), TROTSENKO (Y.A.), KUZNETSOV (B.B.), TOUROVA (T.P.) and SALKINOJA-SALONEN (M.S.): <i>Methylobacterium</i> <i>suomiense</i> sp. nov. and <i>Methylobacterium</i> <i>lusitanum</i> sp. nov., aerobic, pink-pigmented, facultatively methylotrophic bacteria. <i>Int. J. Syst. Evol. Microbiol.</i>, 2002, <b>52</b>, 773-776.
<br>
<a href="http://ijs.sgmjournals.org/cgi/content/abstract/52/3/773">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="tardum" id="tardum"></a>Methylobacterium</span> <span class="genusspecies">tardum</span> Kato <i>et al.</i> 2008, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20tardum&restrict=1">StrainInfo.net</a>) strain RB677 = DSM 19566 = NBRC 103632 = NCIMB 14380.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB252208&cmd=Search&db=nuccore">AB252208</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. neut. adj. <i>tardum</i>, slow, referring to the slow growth of the organism.
<br>
<span class="taxon-subhead">Reference:</span> KATO (Y.), ASAHARA (M.), GOTO (K.), KASAI (H.) and YOKOTA (A.): <i>Methylobacterium</i> <i>persicinum</i> sp. nov., <i>Methylobacterium</i> <i>komagatae</i> sp. nov., <i>Methylobacterium</i> <i>brachiatum</i> sp. nov., <i>Methylobacterium</i> <i>tardum</i> sp. nov. and <i>Methylobacterium</i> <i>gregans</i> sp. nov., isolated from freshwater. <i>Int. J. Syst. Evol. Microbiol.</i>, 2008, <b>58</b>, 1134-1141.
<br>
<a href="http://dx.doi.org/10.1099/ijs.0.65583-0">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p> <span class='genusspecies'><a name=tarhaniae id='tarhaniae'></a>Methylobacterium</span> <span class='genusspecies'>tarhaniae</span> Veyisoglu <i>et al.</i> 2013, sp. nov.
<br> <span class='taxon-subhead'>Type strain:</span> (see also <a href='http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20tarhaniae&restrict=1'>StrainInfo.net</a>) N4211=KCTC 23615=DSM 25844.
<br> <span class='taxon-subhead'>Sequence accession no. (16S rRNA) for the type strain:</span> <a href='http://www.ncbi.nlm.nih.gov/sites/entrez?term=JQ864432&cmd=Search&db=nuccore'>JQ864432</a>.
<br> <span class='taxon-subhead'>Etymology:</span> N.L. fem. gen. n. <i>tarhaniae</i> of Tarhan, named in honour of Leman Tarhan for her contributions to microbial biotechnology.
<br> <span class='taxon-subhead-source'>Source:</span> Environmental - soil.
<br> <span class='taxon-subhead'>Reference:</span> VEYISOGLU, A., CAMAS, M., TATAR, D., GUVEN, K., SAZAK, A. and SAHIN, N. 2013. <i>Methylobacterium tarhaniae</i> sp. nov., isolated from arid soil. <i>Int. J. Syst. Evol. Microbiol.</i>, <b>63</b>, 2823-2828.
<br> <a href='http://dx.doi.org/10.1099/ijs.0.049551-0'>Original article in IJSEM Online</a> </p> <p> <a href='#r'><img border='0' src='../images/top.jpg' width='23' height='11' alt='image'></a> </p>
<p>
<span class="genusspecies"><a name="thiocyanatum" id="thiocyanatum"></a>Methylobacterium</span> <span class="genusspecies">thiocyanatum</span> Wood <i>et al.</i> 1999, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20thiocyanatum&restrict=1">StrainInfo.net</a>) strain ALL/SCN-P = ATCC 700647 = DSM 11490 = JCM 10893 = VKM B-2197.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=U58018&cmd=Search&db=nuccore">U58018</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. n. <i>thiocyanas</i> -<i>atis</i>, thiocyanate; L. neut. suff. -<i>atum</i>, suffix denoting provided with; N.L. neut. adj. <i>thiocyanatum</i>, intended to mean using thiocyanate.
<br>
<span class="taxon-subhead">References:</span> VALIDATION LIST no. 69. <i>Int. J. Syst. Bacteriol.</i>, 1999, <b>49</b>, 341-342. [WOOD (A.P.), KELLY (D.P.), McDONALD (I.R.), JORDAN (S.L.), MORGAN (T.D.), KHAN (S.), MURRELL (J.C.) and BORODINA (E.): A novel pink-pigmented facultative methylotroph, <i>Methylobacterium</i> <i>thiocyanatum</i> sp. nov., capable of growth on thiocyanate or cyanate as sole nitrogen sources. <i>Arch. Microbiol.</i>, 1998, <b>169</b>, 148-158.]
<br>
<a href="http://ijs.sgmjournals.org/cgi/reprint/49/2/341">Validation List no. 69 in IJSEM Online (PDF Format)</a> - <a href="http://dx.doi.org/10.1007/s002030050554">Effective publication Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p> <span class='genusspecies'><a name=thuringiense id='thuringiense'></a>Methylobacterium</span> <span class='genusspecies'>thuringiense</span> Wellner <i>et al.</i> 2013, sp. nov.
<br> <span class='taxon-subhead'>Type strain:</span> (see also <a href='http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20thuringiense&restrict=1'>StrainInfo.net</a>) C34=LMG 25777=CCM 7787.
<br> <span class='taxon-subhead'>Sequence accession no. (16S rRNA) for the type strain:</span> <a href='http://www.ncbi.nlm.nih.gov/sites/entrez?term=FR847847&cmd=Search&db=nuccore'>FR847847</a>.
<br> <span class='taxon-subhead'>Etymology:</span> N.L. neut. adj. <i>thuringiense</i>, referring to Thuringia, the Latin name of the region Thüringen in Germany from where the type strain was isolated.
<br> <span class='taxon-subhead-source'>Source:</span> Plant.
<br> <span class='taxon-subhead'>Reference:</span> WELLNER, S., LODDERS, N., GLAESER, S. P. and KÄMPFER, P. 2013. <i>Methylobacterium trifolii</i> sp. nov. and <i>Methylobacterium thuringiense</i> sp. nov., methanol-utilizing, pink-pigmented bacteria isolated from leaf surfaces. <i>Int. J. Syst. Evol. Microbiol.</i>, <b>63</b>, 2690-2699.
<br> <a href='http://dx.doi.org/10.1099/ijs.0.047787-0'>Original article in IJSEM Online</a> </p> <p> <a href='#r'><img border='0' src='../images/top.jpg' width='23' height='11' alt='image'></a> </p>
<p> <span class='genusspecies'><a name=trifolii id='trifolii'></a>Methylobacterium</span> <span class='genusspecies'>trifolii</span> Wellner <i>et al.</i> 2013, sp. nov.
<br> <span class='taxon-subhead'>Type strain:</span> (see also <a href='http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20trifolii&restrict=1'>StrainInfo.net</a>) TA73=LMG 25778=CCM 7786.
<br> <span class='taxon-subhead'>Sequence accession no. (16S rRNA) for the type strain:</span> <a href='http://www.ncbi.nlm.nih.gov/sites/entrez?term=FR847848&cmd=Search&db=nuccore'>FR847848</a>.
<br> <span class='taxon-subhead'>Etymology:</span> L. n. <i>trifolium</i>, three-leaved grass, trefoil and also a scientific genus name (<i>Trifolium</i>); L. gen. n. <i>trifolii</i> of trefoil, isolated from <i>Trifolium repens</i>.
<br> <span class='taxon-subhead-source'>Source:</span> Plant.
<br> <span class='taxon-subhead'>Reference:</span> WELLNER, S., LODDERS, N., GLAESER, S. P. and KÄMPFER, P. 2013. <i>Methylobacterium trifolii</i> sp. nov. and <i>Methylobacterium thuringiense</i> sp. nov., methanol-utilizing, pink-pigmented bacteria isolated from leaf surfaces. <i>Int. J. Syst. Evol. Microbiol.</i>, <b>63</b>, 2690-2699.
<br> <a href='http://dx.doi.org/10.1099/ijs.0.047787-0'>Original article in IJSEM Online</a> </p> <p> <a href='#r'><img border='0' src='../images/top.jpg' width='23' height='11' alt='image'></a> </p>
<p>
<span class="genusspecies"><a name="variabile" id="variabile"></a>Methylobacterium</span> <span class="genusspecies">variabile</span> Gallego <i>et al.</i> 2005, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20variabile&restrict=1">StrainInfo.net</a>) strain GR3 = CCM 7281 = CECT 7045 = DSM 16961.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AJ851087&cmd=Search&db=nuccore">AJ851087</a>.
<br>
<span class="taxon-subhead">Etymology:</span> L. neut. adj. <i>variabile</i>, variable.
<br>
<span class="taxon-subhead">Reference:</span> GALLEGO (V.), GARCÍA (M.T.) and VENTOSA (A.): <i>Methylobacterium</i> <i>variabile</i> sp. nov., a methylotrophic bacterium isolated from an aquatic environment. <i>Int. J. Syst. Evol. Microbiol.</i>, 2005, <b>55</b>, 1429-1433.
<br>
<a href="http://ijs.sgmjournals.org/cgi/content/abstract/55/4/1429">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
<p>
<span class="genusspecies"><a name="zatmanii" id="zatmanii"></a>Methylobacterium</span> <span class="genusspecies">zatmanii</span> Green <i>et al.</i> 1988, sp. nov.
<br>
<span class="taxon-subhead">Type strain:</span> (see also <a href="http://www.straininfo.net/taxonGet.jsp?taxon=Methylobacterium%20zatmanii&restrict=1">StrainInfo.net</a>) strain <i>Pseudomonas</i> strain 135 of Rock <i>et al.</i> = ATCC 43883 = CCUG 36916 = CIP 103774 = DSM 5688 = IFO (now NBRC) 15845 = JCM 10892 = LMG 6087 = NCIB (now NCIMB) 12243 = VKM B-2161.
<br>
<span class="taxon-subhead">Sequence accession no. (16S rRNA gene) for the type strain:</span> <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?term=AB175647&cmd=Search&db=nuccore">AB175647</a>.
<br>
<span class="taxon-subhead">Etymology:</span> N.L. gen. n. <i>zatmanii</i>, of Zatman, named after the British biochemist L.J. Zatman.
<br>
<span class="taxon-subhead">Reference:</span> GREEN (P.N.), BOUSFIELD (I.J.) and HOOD (D.): Three new <i>Methylobacterium</i> species: <i>M. rhodesianum</i> sp. nov., <i>M. zatmanii</i> sp. nov., and <i>M. fujisawaense</i> sp. nov. <i>Int. J. Syst. Bacteriol.</i>, 1988, <b>38</b>, 124-127.
<br>
<a href="http://ijs.sgmjournals.org/cgi/reprint/38/1/124">Original article in IJSEM Online</a>
</p>
<p>
<a href="#r"><img border="0" src="../images/top.jpg" width="23" height="11" alt="image"></a>
</p>
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</html>début de fichier de sortie
adhaesivum
aerolatum
aminovorans
aquaticum
brachiatum
--------------------- > manque brachythecii (expression du type 2)
bullatum
cerastii
Super merci de votre aide
Hors ligne
#12 Le 15/10/2013, à 12:25
- pingouinux
Re : reaction en fonction de ce que grep trouve
C'est parce que la syntaxe des lignes a changé : " " dans un cas, ' ' et rien dans l'autre
<span class="genusspecies"><a name="brachiatum" id="brachiatum">
<span class='genusspecies'><a name=brachythecii id='brachythecii'>Voici une version corrigée qui devrait mieux faire l'affaire, mais qui ne prendra peut-être pas en compte toutes les variations dans le fichier :
sed -rn 's/.*<span class=["\x27]genusspecies["\x27]><a name="?([^" ]+)"?.*/\1/p' methylobacterium.htmlHors ligne
#13 Le 15/10/2013, à 12:43
- certes
Re : reaction en fonction de ce que grep trouve
ça marche !!!!!!
Hors ligne