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mycroft34

[Résolu] Compilation logiciel EMBOSS

Bonsoir,
Je ne suis pas programmeur, et je ne suis pas sûr de poster dans le bon forum, donc merci de votre indulgence.
Comme l'indique le titre, j'essaie de compiler le package d'analyse de séquences pour la biologie moléculaire EMBOSS-4.1.0; mais je me heurte à une erreur que je ne sais pas interpréter; ci dessous la fin de la phase de compilation juste avant l'erreur:

make[2]: entrant dans le répertoire « /opt/EMBOSS/EMBOSS-4.1.0/emboss »
if gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPAmake[2]: entrant dans le répertoire « /opt/EMBOSS/EMBOSS-4.1.0/emboss »
if gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"EMBOSS\" -DVERSION=\"4.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DX_DISPLAY_MISSING=1 -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_UNISTD_H=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1  -I. -I. -I../nucleus -I../ajax -I../plplot  -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE  -DLENDIAN -DNO_AUTH  -O2 -MT aaindexextract.o -MD -MP -MF ".deps/aaindexextract.Tpo" -c -o aaindexextract.o aaindexextract.c; \
        then mv -f ".deps/aaindexextract.Tpo" ".deps/aaindexextract.Po"; else rm -f ".deps/aaindexextract.Tpo"; exit 1; fi
/bin/bash ../libtool --tag=CC --mode=link gcc  -O2   -o aaindexextract  aaindexextract.o ../nucleus/libnucleus.la ../ajax/libajaxg.la ../ajax/libajax.la ../plplot/libplplot.la -lX11  -lm 
mkdir .libs
gcc -O2 -o .libs/aaindexextract aaindexextract.o  ../nucleus/.libs/libnucleus.so ../ajax/.libs/libajaxg.so ../ajax/.libs/libajax.so ../plplot/.libs/libplplot.so -lX11 -lm  -Wl,--rpath -Wl,/usr/local/lib
/usr/bin/ld: cannot find -lX11
collect2: ld returned 1 exit status
make[2]: *** [aaindexextract] Erreur 1
make[2]: quittant le répertoire « /opt/EMBOSS/EMBOSS-4.1.0/emboss »
make[1]: *** [all-recursive] Erreur 1
make[1]: quittant le répertoire « /opt/EMBOSS/EMBOSS-4.1.0/emboss »
make: *** [all-recursive] Erreur 1
CKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"EMBOSS\" -DVERSION=\"4.1.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DX_DISPLAY_MISSING=1 -DHAVE_DIRENT_H=1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 -DHAVE_UNISTD_H=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 -DHAVE_WORKING_FORK=1 -DHAVE_VPRINTF=1 -DHAVE_MEMMOVE=1 -DHAVE_LIBM=1  -I. -I. -I../nucleus -I../ajax -I../plplot  -DAJ_LinuxLF -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE  -DLENDIAN -DNO_AUTH  -O2 -MT aaindexextract.o -MD -MP -MF ".deps/aaindexextract.Tpo" -c -o aaindexextract.o aaindexextract.c; \
        then mv -f ".deps/aaindexextract.Tpo" ".deps/aaindexextract.Po"; else rm -f ".deps/aaindexextract.Tpo"; exit 1; fi
/bin/bash ../libtool --tag=CC --mode=link gcc  -O2   -o aaindexextract  aaindexextract.o ../nucleus/libnucleus.la ../ajax/libajaxg.la ../ajax/libajax.la ../plplot/libplplot.la -lX11  -lm 
mkdir .libs
gcc -O2 -o .libs/aaindexextract aaindexextract.o  ../nucleus/.libs/libnucleus.so ../ajax/.libs/libajaxg.so ../ajax/.libs/libajax.so ../plplot/.libs/libplplot.so -lX11 -lm  -Wl,--rpath -Wl,/usr/local/lib
/usr/bin/ld: cannot find -lX11
collect2: ld returned 1 exit status
make[2]: *** [aaindexextract] Erreur 1
make[2]: quittant le répertoire « /opt/EMBOSS/EMBOSS-4.1.0/emboss »
make[1]: *** [all-recursive] Erreur 1
make[1]: quittant le répertoire « /opt/EMBOSS/EMBOSS-4.1.0/emboss »
make: *** [all-recursive] Erreur 1

et la sortie de la commande ./configure initiale:

checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for gawk... (cached) gawk
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking how to run the C preprocessor... gcc -E
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for a sed that does not truncate output... /bin/sed
checking for egrep... grep -E
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for /usr/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking whether ln -s works... yes
checking how to recognise dependent libraries... pass_all
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking how to run the C++ preprocessor... g++ -E
checking for g77... g77
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether g77 accepts -g... yes
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for objdir... .libs
checking for ar... ar
checking for ranlib... ranlib
checking for strip... strip
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC
checking if gcc PIC flag -fPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC
checking if g++ PIC flag -fPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for g77 option to produce PIC... -fPIC
checking if g77 PIC flag -fPIC works... yes
checking if g77 static flag -static works... yes
checking if g77 supports -c -o file.o... yes
checking whether the g77 linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether byte ordering is bigendian... no
checking for a BSD-compatible install... /usr/bin/install -c
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for ranlib... (cached) ranlib
checking for X... no
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for ANSI C header files... (cached) yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for pid_t... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking whether getpgrp requires zero arguments... yes
checking for strftime... yes
checking for unistd.h... (cached) yes
checking vfork.h usability... no
checking vfork.h presence... no
checking for vfork.h... no
checking for fork... yes
checking for vfork... yes
checking for working fork... yes
checking for working vfork... (cached) yes
checking for vprintf... yes
checking for _doprnt... no
checking for memmove... yes
checking for gethostbyname in -lc... yes
checking for socket in -lc... yes
checking for main in -lm... yes
checking if docroot is given... no
checking if gcc profiling is selected... no
checking if java include directory given... no
checking if java OS include directory given... no
checking if png driver is wanted... yes
checking for inflateEnd in -lz... no
No png driver will be made due to librarys missing/old.
checking if any authorisation type is given... no
checking for gdome2... no
checking if Linux x86_64... no
checking for large file support... done
checking for purify... no
checking if any threading type is given... no
configure: creating ./config.status
config.status: creating plplot/Makefile
config.status: creating plplot/lib/Makefile
config.status: creating nucleus/Makefile
config.status: creating ajax/Makefile
config.status: creating emboss/Makefile
config.status: creating emboss/acd/Makefile
config.status: creating test/Makefile
config.status: creating test/data/Makefile
config.status: creating test/embl/Makefile
config.status: creating test/genbank/Makefile
config.status: creating test/gb/Makefile
config.status: creating test/pir/Makefile
config.status: creating test/swiss/Makefile
config.status: creating test/swnew/Makefile
config.status: creating test/wormpep/Makefile
config.status: creating emboss/data/Makefile
config.status: creating emboss/data/AAINDEX/Makefile
config.status: creating emboss/data/CODONS/Makefile
config.status: creating emboss/data/REBASE/Makefile
config.status: creating emboss/data/PRINTS/Makefile
config.status: creating emboss/data/PROSITE/Makefile
config.status: creating doc/Makefile
config.status: creating doc/manuals/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating doc/programs/Makefile
config.status: creating doc/programs/html/Makefile
config.status: creating doc/programs/text/Makefile
config.status: creating jemboss/Makefile
config.status: creating jemboss/api/Makefile
config.status: creating jemboss/api/org/Makefile
config.status: creating jemboss/api/org/emboss/Makefile
config.status: creating jemboss/api/org/emboss/jemboss/Makefile
config.status: creating jemboss/api/org/emboss/jemboss/gui/Makefile
config.status: creating jemboss/api/org/emboss/jemboss/gui/filetree/Makefile
config.status: creating jemboss/api/org/emboss/jemboss/gui/form/Makefile
config.status: creating jemboss/api/org/emboss/jemboss/gui/sequenceChooser/Makefile
config.status: creating jemboss/api/org/emboss/jemboss/gui/startup/Makefile
config.status: creating jemboss/api/org/emboss/jemboss/parser/Makefile
config.status: creating jemboss/api/org/emboss/jemboss/parser/acd/Makefile
config.status: creating jemboss/api/org/emboss/jemboss/programs/Makefile
config.status: creating jemboss/api/org/emboss/jemboss/soap/Makefile
config.status: creating jemboss/images/Makefile
config.status: creating jemboss/lib/Makefile
config.status: creating jemboss/lib/axis/Makefile
config.status: creating jemboss/org/Makefile
config.status: creating jemboss/org/emboss/Makefile
config.status: creating jemboss/org/emboss/jemboss/Makefile
config.status: creating jemboss/org/emboss/jemboss/graphics/Makefile
config.status: creating jemboss/org/emboss/jemboss/gui/Makefile
config.status: creating jemboss/org/emboss/jemboss/gui/filetree/Makefile
config.status: creating jemboss/org/emboss/jemboss/gui/form/Makefile
config.status: creating jemboss/org/emboss/jemboss/gui/startup/Makefile
config.status: creating jemboss/org/emboss/jemboss/gui/sequenceChooser/Makefile
config.status: creating jemboss/org/emboss/jemboss/parser/Makefile
config.status: creating jemboss/org/emboss/jemboss/parser/acd/Makefile
config.status: creating jemboss/org/emboss/jemboss/programs/Makefile
config.status: creating jemboss/org/emboss/jemboss/server/Makefile
config.status: creating jemboss/org/emboss/jemboss/soap/Makefile
config.status: creating jemboss/org/emboss/jemboss/editor/Makefile
config.status: creating jemboss/org/emboss/jemboss/draw/Makefile
config.status: creating jemboss/resources/Makefile
config.status: creating jemboss/utils/Makefile
config.status: creating Makefile
config.status: executing depfiles commands

Dernière précision: je suis sous Feisty Fawn.
Si quelqu'un pouvait dire ce que signifie l'erreur de fin de compilation, et m'indiquer le package manquant pour mener à son terme cette compilation, ça me dépannerait bien.
D'avance merci pour l'aide que vous pourrez me fournir.

Dernière modification par mycroft34 (Le 02/06/2007, à 10:16)

mycroft34

Re : [Résolu] Compilation logiciel EMBOSS

Bon, finalement, en réexaminant la sortie de configure, j'ai suspecté que le package libtool manquait à l'appel, et la déduction était bonne. La compilation de base fonctionne; je n'ai plus qu'à trouver comment incorporer les options (java, png, etc).