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Pages : 1

#1 Le 24/05/2023, à 22:21

biospip

[RÉSOLU] Problème de compilation avec cmake et OpenBabel en snap

Bonjour,
lors de la compilation du logiciel MolSketch (pas de binaire disponible pour la dernière version), j'ai l'erreur suivante à la commande cmake .. :

CMake Error at obabeliface/findOpenBabel.cmake:28 (message):
  Could not find OpenBabel includes (try setting '-DOB_INCLUDE_DIRS=<DIR>' or
  '-DMSK_OBABELIFACE=false')
Call Stack (most recent call first):
  obabeliface/findOpenBabel.cmake:45 (findOpenBabel)
  obabeliface/CMakeLists.txt:8 (include)

Une idée pour m'en sortir ?
Cordialement,
Bionet

Dernière modification par biospip (Le 26/05/2023, à 16:08)

profil utilisateur Ubuntu-fr : http://doc.ubuntu-fr.org/utilisateurs/biospip

Hors ligne

#2 Le 24/05/2023, à 22:30

biospip

Re : [RÉSOLU] Problème de compilation avec cmake et OpenBabel en snap

Je pense que le problème vient du fait qu'Ubuntu a installé OpenBabel via snap. Là je suis bloqué. Si je saisi 

cmake -DOB_INCLUDE_DIRS=/snap ..

ou 

cmake -DOB_INCLUDE_DIRS=/snap/openbabel/27/lib ..

cela donne toujours la même erreur.

Edit : j'ai désinstallé OpenBabel pui réinstallé en apt mais rien n'y fait : j'ai toujours la même erreur.

Dernière modification par biospip (Le 24/05/2023, à 22:58)

profil utilisateur Ubuntu-fr : http://doc.ubuntu-fr.org/utilisateurs/biospip

Hors ligne

#3 Le 24/05/2023, à 22:49

biospip

Re : [RÉSOLU] Problème de compilation avec cmake et OpenBabel en snap

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#4 Le 25/05/2023, à 09:17

iznobe

Re : [RÉSOLU] Problème de compilation avec cmake et OpenBabel en snap

Bonjour , déjà , comment as tu procédé pour résoudre le soucis évoqué ici : https://forum.ubuntu-fr.org/viewtopic.php?id=2077535 ?

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#5 Le 25/05/2023, à 09:40

iznobe

Re : [RÉSOLU] Problème de compilation avec cmake et OpenBabel en snap

Alors, en fait dans le fichier " INSTALL ", on voit qu ' il y ait proposé 2 facons de faire , une avec cmake ( qui buggue ) et l' autre avec qmake qui donne le résultat que tu obtiens .

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#6 Le 25/05/2023, à 09:48

iznobe

Re : [RÉSOLU] Problème de compilation avec cmake et OpenBabel en snap

donc voici ce que j ' ai fait ( je n' ai pas fait l' installation , mais toutes les étapes précédentes ) :
téléchargement du fichier , extraction du dossier , création répertoire " buid " dans le dossier extrait , ouvrir un terminal ici , puis :

sudo apt install openbabel openbabel-gui qttools5-dev libqt5svg5-dev

qui ne sont pas inclus d' origine .
ensuite :

iznobe@iznobe-PC:/datas/iznobe/Téléchargements/Molsketch-0.8.0/build$ qmake MSK_OBABELIFACE=false ..
Project MESSAGE: ======= Welcome to Molsketch build =======
Project MESSAGE: Build settings:
Project MESSAGE: "Global prefix": MSK_PREFIX = /usr
Project MESSAGE: "Executable destination dir": MSK_INSTALL_BINS = /usr/bin
Project MESSAGE: "Headers destination dir": MSK_INSTALL_INCLUDES = /usr/include
Project MESSAGE: "Libraries (64bit) destination dir": MSK_INSTALL_LIBS64 = /usr/lib64/molsketch
Project MESSAGE: "Libraries (32bit) destination dir": MSK_INSTALL_LIBS = /usr/lib/molsketch
Project MESSAGE: "Build OpenBabel interface": MSK_OBABELIFACE = false
iznobe@iznobe-PC:/datas/iznobe/Téléchargements/Molsketch-0.8.0/build$
iznobe@iznobe-PC:/datas/iznobe/Téléchargements/Molsketch-0.8.0/build$ make
cd libmolsketch/ && ( test -e Makefile || /usr/lib/qt5/bin/qmake -o Makefile /datas/iznobe/Téléchargements/Molsketch-0.8.0/libmolsketch/libmolsketch.pro MSK_OBABELIFACE=false ) && make -f Makefile 
make[1] : on entre dans le répertoire « /datas/iznobe/Téléchargements/Molsketch-0.8.0/build/libmolsketch »
make[1]: rien à faire pour « first ».
make[1] : on quitte le répertoire « /datas/iznobe/Téléchargements/Molsketch-0.8.0/build/libmolsketch »
cd molsketch/ && ( test -e Makefile || /usr/lib/qt5/bin/qmake -o Makefile /datas/iznobe/Téléchargements/Molsketch-0.8.0/molsketch/molsketch.pro MSK_OBABELIFACE=false ) && make -f Makefile 
make[1] : on entre dans le répertoire « /datas/iznobe/Téléchargements/Molsketch-0.8.0/build/molsketch »
make[1]: rien à faire pour « first ».
make[1] : on quitte le répertoire « /datas/iznobe/Téléchargements/Molsketch-0.8.0/build/molsketch »
iznobe@iznobe-PC:/datas/iznobe/Téléchargements/Molsketch-0.8.0/build$

il ne te reste plus qu ' a taper la commande d' installation et voir ce que ca donne :

sudo make install

Dernière modification par iznobe (Le 26/05/2023, à 08:42)

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#7 Le 25/05/2023, à 22:44

biospip

Re : [RÉSOLU] Problème de compilation avec cmake et OpenBabel en snap

iznobe a écrit :

Bonjour , déjà , comment as tu procédé pour résoudre le soucis évoqué ici : https://forum.ubuntu-fr.org/viewtopic.php?id=2077535 ?

En fait je n'ai pas résolu le problème de cet autre post. C'est la version 0.8 qui est sortie et il n'y a plus ces besoins de dépendances impossibles à mettre en place. Dans l'autre poste c'était la version 0.7.3 de Molsketch qui était mal fagotée.

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#8 Le 25/05/2023, à 23:00

biospip

Re : [RÉSOLU] Problème de compilation avec cmake et OpenBabel en snap

iznobe a écrit :

donc voici ce que j ' ai fait ( je n' ai pas fait l' installation , mais toutes les étapes précédentes )

Un ENORME merci @iznobe pour ton expertise. La compilation a fonctionnée nickel et j'ai enfin réussi à avoir un Molsketch pleinement fonctionnel.
Et dire que je pensais bêtement qu'il me fallait suivre les points 1 puis 2 alors que c'était 1-cmake ou 2-qmake au choix...
Je m'en vais rajouter le lien vers ce fil dans la fiche Molsketch sur la doc.

Encore merci

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